Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04555 ATGGCTTCTATTAGAAGAACCTTGTCCCCAGTTCCTCGGCCTGGAACTTCAATGAATGGAGAAGCATGCTCAGTAGGTTCTCCCCTGTCCAGGTCTTCCCTATCTCCTCAAAACCACCCTCAATCTACTGGACTGCACTATTCCCTATTTAATACATTGGAAACTCAAGCTGCTATTCTTGGGATCTACTCTCCAAGGTCTTCTAGACCATTGGACAAATCGAAACCAAAGGTTCAGATTTGGAGGAGGTCGATGTTCCATTTCTTCATGTGTTTTTTTGTTGGGTTTCTTGCTGGATTGGTGCCATTTGCATCTACCAACTTATCCATGAATGTCATGTCAAAATATCAAGCTTTCCAGTTTGATAGGTTATCCACTGATGAAAAATCTCAGCCTCAGAATAATTTTAGCAGCACCATCTTTATTCCATTGGAAAGCGAAGACATGAAGAGTAGCCAAATCCTACCAGAGGTGCCAATGTATAATAACGTTTCTTATGATAATTTGGATAACCATCTAATTGCTCAAGAATTAGAGCCTCGAAAGCTACTGATAATTGTGACCCCAACATCTGCTCACCCACTACAAGCCTACTATCTTAGCCGTTTGGCGCACACACTAAAGTTGGTCCGACCGCCTCTCCTATGGATCGTTGTGGAAATGTACTCCCAATCAGATGAAACAGCTGATGTATTGAGGAGTACTGGGATTATGTTTAGACATATTGCTTGCACTAAAAACTTAACTGATACGAGAGATGGAAGAGTTCATCAAAGAAATCTAGCCCTGTCTCACATTGAAACCCACCGTCTTGATGGAATCGTTTACTTTGCAGATGAAAATAACTTCTATTTGGTTGATCTATTCGAGAAAATGAGGGAGATCAGACGGTTTGGAACTTGGCCGGTTGCAAAATTATTAGGGGGTACGAGTAGATCCATTCTAGAAGGCCCTGTTTGTAATGGAAACCTTGTAATTGGATGGCACATATATGAATCAAGTATGAGACTCCGCAGGTTTCATGCTGAACTATCAGGCTTTGCTTTCAATAGCACCATACTATGGGATCCAGAGAGGTGGCAGCGACGCACTTCAGAACCTGTGAGGCAGCTTGATTCCATCAAAGATGGCCTCCAAGCAAGCGACTTCATCGAACAAATCGTGGAAGATGAAAGCCAAATGGAAGGATTCCTAGAAGACTGCTCGAGAATCATGGTCTGGAACGTCAATTTTAAACCGTCAAGTGCAGTTTATCCTCACAAATGGTTCGTGACGAATTATCTAGATGCCACTGCTTCACTTACATGA 1308 42.43 MASIRRTLSPVPRPGTSMNGEACSVGSPLSRSSLSPQNHPQSTGLHYSLFNTLETQAAILGIYSPRSSRPLDKSKPKVQIWRRSMFHFFMCFFVGFLAGLVPFASTNLSMNVMSKYQAFQFDRLSTDEKSQPQNNFSSTIFIPLESEDMKSSQILPEVPMYNNVSYDNLDNHLIAQELEPRKLLIIVTPTSAHPLQAYYLSRLAHTLKLVRPPLLWIVVEMYSQSDETADVLRSTGIMFRHIACTKNLTDTRDGRVHQRNLALSHIETHRLDGIVYFADENNFYLVDLFEKMREIRRFGTWPVAKLLGGTSRSILEGPVCNGNLVIGWHIYESSMRLRRFHAELSGFAFNSTILWDPERWQRRTSEPVRQLDSIKDGLQASDFIEQIVEDESQMEGFLEDCSRIMVWNVNFKPSSAVYPHKWFVTNYLDATASLT* 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 39674836 39677876 - CsaV3_3G048610.1 Csa03g04555 525460

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04555 435 MobiDBLite consensus disorder prediction 1 40 - -
Csa03g04555 435 PANTHER GALACTOSYLGALACTOSYLXYLOSYLPROTEIN 3-BETA-GLUCURONOSYLTRANSFERASE BETA-1,3-GLUCURONYLTRANSFERASE 1 432 IPR005027 GO:0015018|GO:0016020
Csa03g04555 435 CDD GlcAT-I 182 413 IPR005027 GO:0015018|GO:0016020
Csa03g04555 435 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 182 425 IPR029044 -
Csa03g04555 435 Pfam Glycosyltransferase family 43 203 411 IPR005027 GO:0015018|GO:0016020
Csa03g04555 435 MobiDBLite consensus disorder prediction 10 40 - -
Csa03g04555 435 PANTHER BETA-1,4-XYLOSYLTRANSFERASE IRX9L-RELATED 1 432 - -
Csa03g04555 435 SUPERFAMILY Nucleotide-diphospho-sugar transferases 183 428 IPR029044 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04555 K20869 IRX9; putative beta-1,4-xylosyltransferase IRX9 [EC:2.4.2.-] - csv:101217095 863.603
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03256 Csa-Chr3:29814405 Csa03g04555 Csa-Chr3:39674836 4.55E-71 dispersed
Csa03g04525 Csa-Chr3:39446304 Csa03g04555 Csa-Chr3:39674836 5.92E-120 dispersed
Csa03g04555 Csa-Chr3:39674836 Csa06g02961 Csa-Chr6:25626844 1.15E-23 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g310 . . . . Bpe02g01178 . . . . . . . Car09g00564 . . . Cpe06g00471 . . . . . . . . . . . . . . . . Cone17ag1154 Cone20ag0574 . Csa03g04555 Chy04g00147 . Blo17g00075 . Bda01g00933 Bda13g01336 Bpe14g00511 . . . . . Cmo09g00620 Cma09g00638 . . . . . Bhi09g02586 . . . . . . . . . . . . . . . . Cme04g00173
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010529 2 4 2 2 2 0 1 1 0 1 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 32