Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa03g04575 | ATGGGTGGCAGTGAGATGAATAAATCCGCAAAGGAAGAATCCAAAACAGCACCTGCCACTACGCAGGAACAGTCTCCAAATACAAGCACTGGCACTGTTAATCCTGAATGGTCAGGATTTCAGGCATATTCTCCAATACCTCCACCTGGATATTTGGCAACGAGCCCCCAAGCACACCCGTATATGTGGGGGGTACAGCCTATTATGCCCCCTTACGGAACTCCTCCACATCCATATGTTGCAATGTATCCTCATGGTGGCATATATGCTCATCCACCTATGCCTCCTGGATCGTATCCTTACAGTCCTTTTGCTATTGCTTCTCCAAATGGCATTGCTGAGGCTTCTGGGAATACACCAAGCAACATGGAAGGGGAAGGTAAACCATCTGAGCTGAAAGAAAAATTGCCAATTAAAAGATCGAAAGGAAGTCTGGGAAGTTTAAGCATGATAACTGGGAAGAACAATGAGCTTGGTAAACCATCAGGAACGTCTGCTAATGGAGTTTATTCTAAAAGTGCTGAAAGTGAAAGTGAAGGCACGAGTGAACGAAGTGATGCTGACTCTGAAAACGATTCACAACTAAAATCTGGTTCTGGGAAAGATTCTTTAGAAGGTGGAGGGACTCCTAATGGTTTAATGCATGGTTCTCAGAATGAAGGACATAGTCTTGCACATCCATTGGTGAACCAAACGATGTCCATAATACCTATCCAAGCTTCTGGAGCTGTTACAGGTCCTGCTACAAATTTGAATATAGGAATGGATTATTGGGGTACCCCAACAACTTCTGCCATTTCTTCATTGTGTGGGAAGGTTCCTTCAGCACCAGTTGCAGGAGCTGTTGCTGCTGGGTCACGAGACGGCATTCCGTCACAGCCTTGGTTACAGGATGAAAGAGAGCTAAAACGACAAAGAAGGAAGCAATCAAATAGAGAATCTGCTCGTAGATCTCGGTTGCGTAAACAGGCTGAATGCGATGAACTATCTCAACGTGCCGAAGCTTTGAAGGAAGAAAATGCTAGTCTAAGATCTGAAGTGGATAGGATTAGGACTGAGTACGAGCAACTTCTTTCAGAAAATGCCTCACTCAAGAGGAGGCTTGGCGAAAGTGATGGAAATGAAGATCCAAGATCTACCAAAGACGCACAAAATTTGAAAAAAGGTCATCATACATCCCGGACCCAACTTGCTAAGGGGTAA | 1203 | 44.64 | MGGSEMNKSAKEESKTAPATTQEQSPNTSTGTVNPEWSGFQAYSPIPPPGYLATSPQAHPYMWGVQPIMPPYGTPPHPYVAMYPHGGIYAHPPMPPGSYPYSPFAIASPNGIAEASGNTPSNMEGEGKPSELKEKLPIKRSKGSLGSLSMITGKNNELGKPSGTSANGVYSKSAESESEGTSERSDADSENDSQLKSGSGKDSLEGGGTPNGLMHGSQNEGHSLAHPLVNQTMSIIPIQASGAVTGPATNLNIGMDYWGTPTTSAISSLCGKVPSAPVAGAVAAGSRDGIPSQPWLQDERELKRQRRKQSNRESARRSRLRKQAECDELSQRAEALKEENASLRSEVDRIRTEYEQLLSENASLKRRLGESDGNEDPRSTKDAQNLKKGHHTSRTQLAKG* | 401 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 39806582 | 39817079 | + | CsaV3_3G048810.1 | Csa03g04575 | 525480 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa03g04575 | 400 | MobiDBLite | consensus disorder prediction | 113 | 223 | - | - | |
Csa03g04575 | 400 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 301 | 364 | IPR004827 | GO:0003700|GO:0006355 | |
Csa03g04575 | 400 | MobiDBLite | consensus disorder prediction | 177 | 191 | - | - | |
Csa03g04575 | 400 | PANTHER | G-BOX-BINDING FACTOR 3-RELATED | 1 | 392 | IPR044827 | GO:0003700|GO:0006355|GO:0043565 | |
Csa03g04575 | 400 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 306 | 321 | IPR004827 | GO:0003700|GO:0006355 | |
Csa03g04575 | 400 | Coils | Coil | 312 | 367 | - | - | |
Csa03g04575 | 400 | MobiDBLite | consensus disorder prediction | 1 | 48 | - | - | |
Csa03g04575 | 400 | CDD | bZIP_plant_GBF1 | 304 | 354 | IPR045314 | GO:0003700|GO:0006355 | |
Csa03g04575 | 400 | Pfam | G-box binding protein MFMR | 1 | 95 | IPR012900 | - | |
Csa03g04575 | 400 | Pfam | Disordered region downstream of MFMR | 134 | 266 | - | - | |
Csa03g04575 | 400 | SUPERFAMILY | Leucine zipper domain | 302 | 358 | IPR046347 | GO:0003700|GO:0006355 | |
Csa03g04575 | 400 | Pfam | bZIP transcription factor | 299 | 361 | IPR004827 | GO:0003700|GO:0006355 | |
Csa03g04575 | 400 | MobiDBLite | consensus disorder prediction | 299 | 327 | - | - | |
Csa03g04575 | 400 | MobiDBLite | consensus disorder prediction | 365 | 389 | - | - | |
Csa03g04575 | 400 | Gene3D | - | 302 | 358 | - | - | |
Csa03g04575 | 400 | MobiDBLite | consensus disorder prediction | 13 | 39 | - | - | |
Csa03g04575 | 400 | SMART | brlzneu | 299 | 363 | IPR004827 | GO:0003700|GO:0006355 | |
Csa03g04575 | 400 | MobiDBLite | consensus disorder prediction | 145 | 176 | - | - | |
Csa03g04575 | 400 | MobiDBLite | consensus disorder prediction | 358 | 400 | - | - | |
Csa03g04575 | 400 | PANTHER | BZIP TRANSCRIPTION FACTOR 68 | 1 | 392 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa03g03403 | Csa-Chr3:30711069 | Csa03g04575 | Csa-Chr3:39806582 | 1.24E-08 | dispersed | |
Csa03g04575 | Csa-Chr3:39806582 | Csa06g03222 | Csa-Chr6:27264439 | 8.59E-66 | dispersed | |
Csa03g00836 | Csa-Chr3:7108899 | Csa03g04575 | Csa-Chr3:39806582 | 1.05E-47 | transposed | |
Csa03g00131 | Csa-Chr3:1007649 | Csa03g04575 | Csa-Chr3:39806582 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
31438 | PF16596 | MFMR_assoc | 4.50E-46 | No_clan | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa03g04575 | K09060 | - | csv:101214217 | 792.341 |