Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04575 ATGGGTGGCAGTGAGATGAATAAATCCGCAAAGGAAGAATCCAAAACAGCACCTGCCACTACGCAGGAACAGTCTCCAAATACAAGCACTGGCACTGTTAATCCTGAATGGTCAGGATTTCAGGCATATTCTCCAATACCTCCACCTGGATATTTGGCAACGAGCCCCCAAGCACACCCGTATATGTGGGGGGTACAGCCTATTATGCCCCCTTACGGAACTCCTCCACATCCATATGTTGCAATGTATCCTCATGGTGGCATATATGCTCATCCACCTATGCCTCCTGGATCGTATCCTTACAGTCCTTTTGCTATTGCTTCTCCAAATGGCATTGCTGAGGCTTCTGGGAATACACCAAGCAACATGGAAGGGGAAGGTAAACCATCTGAGCTGAAAGAAAAATTGCCAATTAAAAGATCGAAAGGAAGTCTGGGAAGTTTAAGCATGATAACTGGGAAGAACAATGAGCTTGGTAAACCATCAGGAACGTCTGCTAATGGAGTTTATTCTAAAAGTGCTGAAAGTGAAAGTGAAGGCACGAGTGAACGAAGTGATGCTGACTCTGAAAACGATTCACAACTAAAATCTGGTTCTGGGAAAGATTCTTTAGAAGGTGGAGGGACTCCTAATGGTTTAATGCATGGTTCTCAGAATGAAGGACATAGTCTTGCACATCCATTGGTGAACCAAACGATGTCCATAATACCTATCCAAGCTTCTGGAGCTGTTACAGGTCCTGCTACAAATTTGAATATAGGAATGGATTATTGGGGTACCCCAACAACTTCTGCCATTTCTTCATTGTGTGGGAAGGTTCCTTCAGCACCAGTTGCAGGAGCTGTTGCTGCTGGGTCACGAGACGGCATTCCGTCACAGCCTTGGTTACAGGATGAAAGAGAGCTAAAACGACAAAGAAGGAAGCAATCAAATAGAGAATCTGCTCGTAGATCTCGGTTGCGTAAACAGGCTGAATGCGATGAACTATCTCAACGTGCCGAAGCTTTGAAGGAAGAAAATGCTAGTCTAAGATCTGAAGTGGATAGGATTAGGACTGAGTACGAGCAACTTCTTTCAGAAAATGCCTCACTCAAGAGGAGGCTTGGCGAAAGTGATGGAAATGAAGATCCAAGATCTACCAAAGACGCACAAAATTTGAAAAAAGGTCATCATACATCCCGGACCCAACTTGCTAAGGGGTAA 1203 44.64 MGGSEMNKSAKEESKTAPATTQEQSPNTSTGTVNPEWSGFQAYSPIPPPGYLATSPQAHPYMWGVQPIMPPYGTPPHPYVAMYPHGGIYAHPPMPPGSYPYSPFAIASPNGIAEASGNTPSNMEGEGKPSELKEKLPIKRSKGSLGSLSMITGKNNELGKPSGTSANGVYSKSAESESEGTSERSDADSENDSQLKSGSGKDSLEGGGTPNGLMHGSQNEGHSLAHPLVNQTMSIIPIQASGAVTGPATNLNIGMDYWGTPTTSAISSLCGKVPSAPVAGAVAAGSRDGIPSQPWLQDERELKRQRRKQSNRESARRSRLRKQAECDELSQRAEALKEENASLRSEVDRIRTEYEQLLSENASLKRRLGESDGNEDPRSTKDAQNLKKGHHTSRTQLAKG* 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 39806582 39817079 + CsaV3_3G048810.1 Csa03g04575 525480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04575 400 MobiDBLite consensus disorder prediction 113 223 - -
Csa03g04575 400 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 301 364 IPR004827 GO:0003700|GO:0006355
Csa03g04575 400 MobiDBLite consensus disorder prediction 177 191 - -
Csa03g04575 400 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 392 IPR044827 GO:0003700|GO:0006355|GO:0043565
Csa03g04575 400 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 306 321 IPR004827 GO:0003700|GO:0006355
Csa03g04575 400 Coils Coil 312 367 - -
Csa03g04575 400 MobiDBLite consensus disorder prediction 1 48 - -
Csa03g04575 400 CDD bZIP_plant_GBF1 304 354 IPR045314 GO:0003700|GO:0006355
Csa03g04575 400 Pfam G-box binding protein MFMR 1 95 IPR012900 -
Csa03g04575 400 Pfam Disordered region downstream of MFMR 134 266 - -
Csa03g04575 400 SUPERFAMILY Leucine zipper domain 302 358 IPR046347 GO:0003700|GO:0006355
Csa03g04575 400 Pfam bZIP transcription factor 299 361 IPR004827 GO:0003700|GO:0006355
Csa03g04575 400 MobiDBLite consensus disorder prediction 299 327 - -
Csa03g04575 400 MobiDBLite consensus disorder prediction 365 389 - -
Csa03g04575 400 Gene3D - 302 358 - -
Csa03g04575 400 MobiDBLite consensus disorder prediction 13 39 - -
Csa03g04575 400 SMART brlzneu 299 363 IPR004827 GO:0003700|GO:0006355
Csa03g04575 400 MobiDBLite consensus disorder prediction 145 176 - -
Csa03g04575 400 MobiDBLite consensus disorder prediction 358 400 - -
Csa03g04575 400 PANTHER BZIP TRANSCRIPTION FACTOR 68 1 392 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03403 Csa-Chr3:30711069 Csa03g04575 Csa-Chr3:39806582 1.24E-08 dispersed
Csa03g04575 Csa-Chr3:39806582 Csa06g03222 Csa-Chr6:27264439 8.59E-66 dispersed
Csa03g00836 Csa-Chr3:7108899 Csa03g04575 Csa-Chr3:39806582 1.05E-47 transposed
Csa03g00131 Csa-Chr3:1007649 Csa03g04575 Csa-Chr3:39806582 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31438 PF16596 MFMR_assoc 4.50E-46 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04575 K09060 - csv:101214217 792.341