Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04576 ATGCAAATTTCGGGTGTAATCAGCGACGTTCCCGTTGTAATTCCGTCTGCCGGCGGCCTCCGTTCCTCGGAACTGAGACACTGTCATGCATCTATCGACTCTAAGAGTTCCATTTCCGCTGGATTCTTTAGAGGATGTTCATCATTTTACATGCCAAAGGCTGGATCTAGTTTGGATAAATTTCGATTGAGGGGCTTCAGTATTAGAGCTTCAGATGATTCTCGGAATGTTTATCCAGTTGCACCTGTTCAATTTGAATCCCCAGTTGGCCAGCTATTGGCCCAGATATTGCAATCTCACCCTCATTTGCTTCCTGCAACTGTGGACCAGCAACTTGATAACCTTCAAACTGAGAGAGATTCTCAGACAGAAGAGGCTCCTTCCTCATCTCAAGATCCTCTCTACAAGAGGATAGCTGAAGTGAAAGACAAGGAAAGGCGAAAGACGTTGGAAGAGATATTATATTGCTTGATCGTTGGAAAGTTTGTGGAGAATGACATTTCAATGATCCCCAAGATAACAGAAACCTCAGATCCCACCGGCCGAGTTGATTTTTGGCCAAACCAAGAGCAGAAACTTGAATCCGTCCATTCTCCTGAGGCATTTGAAATGATCCAAAGTCACTTGTCTCTTGTCCTTGGCGATCGAGTTGTCGGTCCCTTCAGTTCCATTGTTGAAATGAGCAAAATAAAACTCGGGAAGCTATATGCGGCTTCTATTATGTATGGATATTTTCTCAAAAGAGTTGACCAACGTTTCCAACTTGAAAGGACTATGAAAACTCTTCCTGAAGCGTTTACAAAAGACTTTGATGAACCGATACCGGCAAATCAACTCTGGGATCCTGATTCCTTGATAAGGATTGCACCTGATGATGAAGGGTTCGGCGACAGCCGGGGACTTATCGATGCTGATGACGGAAAATCATATAGATTGAGATCCTATGTGATGTATTTGGATTCTGAGACACTTCAAAGATATGCAACATTGAGATCCAAAGAAGCTATTTCTTTGATCGAAAAGCAGACTCAATCATTGTTTGGTAAACCAGACATTAGGATAGCAGCTGATGGTTCAATCGACACATTGAACGATGAAGTGATCTCTCTTACATTCTCTGGGTTGACAATGCTAGTACTGGAAGCTGTTGCCTTTGGATCATTCCTCTGGGATGCCGAAAGCTACGTCGAATCAAAATACAACTTCATCCAAACCTGA 1218 43.1 MQISGVISDVPVVIPSAGGLRSSELRHCHASIDSKSSISAGFFRGCSSFYMPKAGSSLDKFRLRGFSIRASDDSRNVYPVAPVQFESPVGQLLAQILQSHPHLLPATVDQQLDNLQTERDSQTEEAPSSSQDPLYKRIAEVKDKERRKTLEEILYCLIVGKFVENDISMIPKITETSDPTGRVDFWPNQEQKLESVHSPEAFEMIQSHLSLVLGDRVVGPFSSIVEMSKIKLGKLYAASIMYGYFLKRVDQRFQLERTMKTLPEAFTKDFDEPIPANQLWDPDSLIRIAPDDEGFGDSRGLIDADDGKSYRLRSYVMYLDSETLQRYATLRSKEAISLIEKQTQSLFGKPDIRIAADGSIDTLNDEVISLTFSGLTMLVLEAVAFGSFLWDAESYVESKYNFIQT* 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 39818018 39821740 + CsaV3_3G048820.1 Csa03g04576 525481

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04576 405 Pfam Protein of unknown function (DUF760) 134 259 IPR008479 -
Csa03g04576 405 PANTHER EXPRESSED PROTEIN 1 404 IPR038925 -
Csa03g04576 405 PANTHER OSJNBA0093F12.3 PROTEIN 1 404 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04576 - - - csv:101213975 797.734
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00736 Csa-Chr1:4648971 Csa03g04576 Csa-Chr3:39818018 1.05E-115 dispersed
Csa03g04576 Csa-Chr3:39818018 Csa07g01541 Csa-Chr7:15778599 1.93E-49 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g736 . . . . . . Bma07g00907 . . . Cma02g01639 . Car02g01398 . . . Cpe05g00155 . . . . . . . . . . . . . . . . . . . . Chy04g00129 . . . . . . . . . Sed08g2776 Cmo02g01684 . . . . . . . Bhi05g00441 Tan07g2013 Cmetu04g3093 Lac11g2453 Hepe06g1804 . Lcy12g1976 Cla09g01089 Cam09g1142 Cec09g1152 Cco09g1168 . . Cre09g1105 . Csa03g04576 . Cme04g00152
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011580 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 1 1 1 1 30