Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04584 ATGTATGGGGATTGCCAAGTGATGTCAAGCAATATGGGAGGAAATATGGTTTCCACTGAATCTCTCTTTTCTTCTCCAATTCAAAACCCTAATTTCAATTTCATCTCCAATTTTCAACACTTTCCTTCCATTGTACCGAAGGAAGAAAATGGGTTGATGATGAGAGGAGGGAAAGAAGACATGGAAAGTGGGTCTGGAAGTGAACAACTTGTTGAAGAAAATCAAGGAATTGAAATGGAAAGTAATATTAATAATAATGATAGTATTACTCAGCAGAATCAGAAGAAAAAACGCTATCACAGACATACTGCTCGCCAGATCCAAGAAATGGAAGCGTTATTTAAGGAATGTCCACACCCAGATGATAAGCAAAGGCTAAAACTCAGCCAAGAACTTGGCCTCAAACCTCGCCAAGTTAAATTTTGGTTCCAAAATCGTAGAACCCAAATGAAGGCACAACAAGATAGATCCGATAATGTGATACTTAGAGCAGAAAATGAGACATTAAAGAATGAGAATTATAGATTACAAAGTGCCCTAAGAAACATAATATGCCCTAGCTGTGGAGGGCAGGGTATCCTTGGTGAACCAAGCTTGGATGAACAACAGCTTCGTCTTGAGAATGCTAGACTTAGAGATCAGTTGGAACAAGTTTGCTCTATGACCACAAGATACACTGGCCGCCCAATCCAAGCAATGGCATCAGCAGCTCCTCCTCTTATGCAACCATCATTGGATTTGGACATGAACATATACTCAAGACAATACACTGAGGCCATGGTTCCGTCCTCTGACATGATGGCGTTGCCCTCGATGCTCCCACCTGAGGCCGCCCACTTCCCAGAAGGAGGCCTGTTAATTGAGGAGGAGAAAACACTTGCAATGGACCTTGCTGTTTCGTCCATAGCTGAACTTGTGAAGATGTGTCGCTTGACCGAGCCTCTTTGGGTTCGAGACAATGAGAGCGGTAAGGAAGTTCTAAATGTTGAAGAGCATGGGAGGATGTTTCCATGGCCATTGAACCTCAAGCAACACTTGATCAATGAGTTTAGGACCGAAGCAACACGTGATAGCGCGGTTGTTATAATGAATAGCATCACTCTTGTTGACGCCTTTCTCGATGCTAACAAATGGATGGAATTGTTTCCTTCAATTGTGGCCAAAGCAAAGACTGTGCAAGTCATTTCATCAAGTGTTTCAGGCCATGCCTCTTCTTCCCTTCAGATGTATGCAGAACTTCAGACACTTTCTCCTCTAGTTCCGACGAGAGAAGCACATTTTCTCCGGTGCTGCCAACAGAATGCCGACGAAGGAAGCTGGACCGTCGTTGATTTTCCAATCGATAGCTTCCATGACAGTCTTCAGCACTCATTTCCCAGATACAGAAGAAAGCCCTCTGGCTGTATTATTCAAGACATGCCCAATGGATATTCTAGGGTTACATGGGTGGAGCATGCAGAGATAGAAGAGAAGCCAATCCATCAAATATTCAATCATTTTGTGCACAGTGGAATGGCCTTTGGGGCAAATCGTTGGTTGGCCATTTTACAAAGACAATGTGAGAGAATTGCAAGTCTCATGGCTAGAAATATTTCTGACCTTGGAGTAATACCTTCACCAGAGGCAAGACAAAACCTAATGAAACTGGCACAAAGAATGATCAGAACTTTCTCTGTCAACATAAGCACCTCCGGTGGCCAGTCCTGGACAGCGTTATCGGATTCTCCCGAGGATACTGTTCGTATAACCACTCGAAAAGTTGTCGAGCCTGGCCAACCCAATGGGGTTATTCTTAGCGCTGTCTCCACTACTTGGCTTCCTTATCCTCATTATCGAGTCTTCGATCTTCTACGAGACGAACGACGACGTTCTCAGCTGGAGGTTCTTTCGAATGGGAATTCCTTGCACGAAGTTGCTCACATTGCTAATGGCTCTCACCCTGGAAACTGCATCTCCCTTCTTCGTATCAATGTGGCCAGCAACTCCTCCCAACATGTTGAGCTGATGCTGCAGGAGAGTTGCACAGACCAATCTGGCAGTCTCGTTGTCTACGCAACAATTGACGTTGATTCAATTCAATTAGCAATGAGCGGAGAAGACCCCTCCTGCATTCCCCTCCTCCCCATAGGATTTTCCATCGTACCCATCATCGGGTCAACCATCGACGGACATCCAGCACCGCCACCCGAGGATGGTACTCCAAATCCCAACTCTGGTTGCCTCCTTACCGTTGGCTTACAAGTTCTAGCCAGCACCATCCCATCCGCGAAGCTCAACTTATCAAGTGTAACTGCCATCAACAACCACCTCTGTAACACGGTGCACCAAATCAACATTGCTCTCGGCGGCCCAGGTCGTTTGGAGAACGACAACGTGGTGGCTGAGCCGAATAATCCACCGACACCACCACCGCCGCCGCCCCCATCCAAGCAGTAA 2436 45.89 MYGDCQVMSSNMGGNMVSTESLFSSPIQNPNFNFISNFQHFPSIVPKEENGLMMRGGKEDMESGSGSEQLVEENQGIEMESNINNNDSITQQNQKKKRYHRHTARQIQEMEALFKECPHPDDKQRLKLSQELGLKPRQVKFWFQNRRTQMKAQQDRSDNVILRAENETLKNENYRLQSALRNIICPSCGGQGILGEPSLDEQQLRLENARLRDQLEQVCSMTTRYTGRPIQAMASAAPPLMQPSLDLDMNIYSRQYTEAMVPSSDMMALPSMLPPEAAHFPEGGLLIEEEKTLAMDLAVSSIAELVKMCRLTEPLWVRDNESGKEVLNVEEHGRMFPWPLNLKQHLINEFRTEATRDSAVVIMNSITLVDAFLDANKWMELFPSIVAKAKTVQVISSSVSGHASSSLQMYAELQTLSPLVPTREAHFLRCCQQNADEGSWTVVDFPIDSFHDSLQHSFPRYRRKPSGCIIQDMPNGYSRVTWVEHAEIEEKPIHQIFNHFVHSGMAFGANRWLAILQRQCERIASLMARNISDLGVIPSPEARQNLMKLAQRMIRTFSVNISTSGGQSWTALSDSPEDTVRITTRKVVEPGQPNGVILSAVSTTWLPYPHYRVFDLLRDERRRSQLEVLSNGNSLHEVAHIANGSHPGNCISLLRINVASNSSQHVELMLQESCTDQSGSLVVYATIDVDSIQLAMSGEDPSCIPLLPIGFSIVPIIGSTIDGHPAPPPEDGTPNPNSGCLLTVGLQVLASTIPSAKLNLSSVTAINNHLCNTVHQINIALGGPGRLENDNVVAEPNNPPTPPPPPPPSKQ* 812
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 39911797 39918883 - CsaV3_3G048900.1 Csa03g04584 525489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04584 811 Gene3D - 80 164 - -
Csa03g04584 811 Gene3D - 341 521 IPR023393 -
Csa03g04584 811 SMART HOX_1 94 157 IPR001356 GO:0003677
Csa03g04584 811 Pfam Homeodomain 96 151 IPR001356 GO:0003677
Csa03g04584 811 ProSiteProfiles START domain profile. 287 525 IPR002913 GO:0008289
Csa03g04584 811 SUPERFAMILY Homeodomain-like 84 154 IPR009057 -
Csa03g04584 811 SMART START_1 296 522 IPR002913 GO:0008289
Csa03g04584 811 MobiDBLite consensus disorder prediction 796 811 - -
Csa03g04584 811 PANTHER - 53 787 - -
Csa03g04584 811 SUPERFAMILY Bet v1-like 289 524 - -
Csa03g04584 811 Coils Coil 152 172 - -
Csa03g04584 811 Pfam START domain 298 522 IPR002913 GO:0008289
Csa03g04584 811 ProSitePatterns 'Homeobox' domain signature. 128 151 IPR017970 GO:0000981|GO:0006355
Csa03g04584 811 SUPERFAMILY Bet v1-like 559 777 - -
Csa03g04584 811 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 53 787 IPR042160 -
Csa03g04584 811 CDD homeodomain 96 154 IPR001356 GO:0003677
Csa03g04584 811 MobiDBLite consensus disorder prediction 788 811 - -
Csa03g04584 811 CDD START_ArGLABRA2_like 291 521 - -
Csa03g04584 811 ProSiteProfiles 'Homeobox' domain profile. 93 153 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04584 Csa-Chr3:39911797 Csa07g00370 Csa-Chr7:2759169 0 dispersed
Csa03g04584 Csa-Chr3:39911797 Csa06g00579 Csa-Chr6:4976972 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31441 PF01852 START 1.90E-42 CL0209 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04584 - - csv:101212772 1589.32