Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04588 ATGAGAAAGTCCGGAAGAGGAGGCCGGTGGACTGATCACAATCGAAACCAAGAGGTTTGGGTCGCCAAACACACCAATCAATCACACAATCACGCTTCTACTTCCGCCTCACAACCTTCCCACCTCTCTAATCCTTCTCCTACGGCTCGTAATTTCAATTACGACCATCGCATTCCCCGCCGTCCCCGTCCTCACCCTGTCCACAAACCGGAGGTCACTGCTTTGGCCGATGGAATAGAGACTTTCACTTTCGACGAAAAGCCTGTGGACTTCGATGTTGCGAAACCTAACTGTGAGGTTACACCTGGAAATTCTTCCTTAACTGAGGCCGAGGATGATGTTTATAGTAGGTTAGAAATGCTGCAGCGGAGTTCCGAGGAGCCGGAGTTGTCGGAGGAGCAGCTCAGTATTAATAATCAGTTGCAGGAAGATGAGTTGCTGGCTTTGGAGTCCATATATGGAGAAAATGTCTATATCCTCGATGAATATAAAGGGCAGCGCCGTTTCCAGATTTTCATACACATTGAGAATCCTGGTGATATTACTATAACTGCAAAGCTTAATTCATCTAGTTCCCTTGAGATCAAAAGTCCTAATTCAGATGAATTCTCCTGTTCTTTCGATGTGAAGTACCTTAACCCCATTGTTTTGACCTGTTTATTACCAAAAGTGTATCCTAGTCATCTACCTCCATATTATACAATCTCTATTCGGTGGTTGGACTCTGCTAGGATTTCTAGGCTTTGCTCTGTGTTGGATGGGATATGGAGTGAACAAGTGGGGCAGGAAGTTGTATATCAATGGGTAGAATGGCTACAAATGTCATCTCTGGCTTATCTTCAGTCAGATAAAGAGATTATGCTTGGTCCTTACGATAAGGGACATTCAGGAGATACTCGGGCAGTTTCAGGAATTGTTTCTCCAGAAGTTGATGTTCCTGCTATTATAAATTATGACAATCAGAGACGTGATGAGGACTTCTGCATGAATTTGCAAGAGTGCTGCATCTGTCTAAGTCAGTATGCAGGTGCAAAGTTTGTTAGATTGCCATGTAAACATTACTTTTGCTGGAAGTGCATGGAGACATACTCGAGCATGCATGTCAAGGAAGGCACAGTAAGCAAACTCAATTGTCCAGACGCCAAATGTGATGTTATGGTTCCTCCTGGTCTTTTGAAGCAATTGCTTGGCGATGAGGAGTTTGAAAGATGGGAATCCATGATGCTCACAAAAACACTGGAATCGATGTCAGATGTTGTCTATTGCCCAAGGTGTGAAACACCCTGCCTAGAGGACGTCGATCATGATGCTCAATGTTCCAAGTGTTACTTCAGTTTTTGTACACTCTGTAGCGAGCGACGTCATGTCGGAATTGAATGTATGACTCCAGAAATGAAGCTTCGTCTTCTCGAGGAGCGTCAAAATTCATCTCAGTTAGGCAGTGAACAAAGAAGAAAGGAGCGCGAGATGATAAATGAGCTTATTAGTGTCAAGGAAATACTTCGTGATGCCAAGCAATGCCCATCGTGTAAAATGGCAATATCACGGACCGAGGGATGCAATAAGATGGTTTGCAATAACTGTGGACAGTATTTCTGTTACCGCTGTAGCAAGGCAATTGATGGATATGACCATTTCAGGGAGGGGTCATGTGAATTGTTCCCGCAAGAAGCCATTCAACAGTGGGAAGAGCGCATGAATGCACGGCAGGTTTTGGGCCAGATTCAAGCTGAACTTTTTCCTGAAAATGGTCATCCATGTCCTAATTGTGGTCAACTTAATGCCAAGGTTGGGAATAACAATCACATACGTTGTTGGTCATGTCAAATCCACTACTGCTATTTATGTAGAAAAGTTGTGAAACGCAGCTCCCAACATTATGGACCCAAAGGATGCAAACAACACACGGTGGGTTGA 1917 44.08 MRKSGRGGRWTDHNRNQEVWVAKHTNQSHNHASTSASQPSHLSNPSPTARNFNYDHRIPRRPRPHPVHKPEVTALADGIETFTFDEKPVDFDVAKPNCEVTPGNSSLTEAEDDVYSRLEMLQRSSEEPELSEEQLSINNQLQEDELLALESIYGENVYILDEYKGQRRFQIFIHIENPGDITITAKLNSSSSLEIKSPNSDEFSCSFDVKYLNPIVLTCLLPKVYPSHLPPYYTISIRWLDSARISRLCSVLDGIWSEQVGQEVVYQWVEWLQMSSLAYLQSDKEIMLGPYDKGHSGDTRAVSGIVSPEVDVPAIINYDNQRRDEDFCMNLQECCICLSQYAGAKFVRLPCKHYFCWKCMETYSSMHVKEGTVSKLNCPDAKCDVMVPPGLLKQLLGDEEFERWESMMLTKTLESMSDVVYCPRCETPCLEDVDHDAQCSKCYFSFCTLCSERRHVGIECMTPEMKLRLLEERQNSSQLGSEQRRKEREMINELISVKEILRDAKQCPSCKMAISRTEGCNKMVCNNCGQYFCYRCSKAIDGYDHFREGSCELFPQEAIQQWEERMNARQVLGQIQAELFPENGHPCPNCGQLNAKVGNNNHIRCWSCQIHYCYLCRKVVKRSSQHYGPKGCKQHTVG* 639
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 39941662 39945329 - CsaV3_3G048940.1 Csa03g04588 525493

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04588 638 ProSiteProfiles Zinc finger RING-type profile. 334 382 IPR001841 -
Csa03g04588 638 MobiDBLite consensus disorder prediction 20 51 - -
Csa03g04588 638 SUPERFAMILY RING/U-box 331 415 - -
Csa03g04588 638 MobiDBLite consensus disorder prediction 54 69 - -
Csa03g04588 638 ProSitePatterns Zinc finger RING-type signature. 351 360 IPR017907 -
Csa03g04588 638 ProSiteProfiles TRIAD supradomain profile. 330 556 IPR044066 -
Csa03g04588 638 SMART RWD2001b 144 279 IPR006575 GO:0005515
Csa03g04588 638 MobiDBLite consensus disorder prediction 1 69 - -
Csa03g04588 638 Pfam IBR domain, a half RING-finger domain 499 540 IPR002867 -
Csa03g04588 638 Pfam IBR domain, a half RING-finger domain 402 460 IPR002867 -
Csa03g04588 638 Gene3D - 481 579 - -
Csa03g04588 638 SUPERFAMILY UBC-like 138 273 IPR016135 -
Csa03g04588 638 Gene3D Ubiquitin Conjugating Enzyme 130 284 IPR016135 -
Csa03g04588 638 SUPERFAMILY RING/U-box 493 546 - -
Csa03g04588 638 MobiDBLite consensus disorder prediction 1 19 - -
Csa03g04588 638 SUPERFAMILY RING/U-box 402 464 - -
Csa03g04588 638 SMART ring_2 334 381 IPR001841 -
Csa03g04588 638 SMART ring_2 507 590 IPR001841 -
Csa03g04588 638 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 111 578 IPR031127 GO:0004842|GO:0016567
Csa03g04588 638 SMART ibrneu5 402 460 IPR002867 -
Csa03g04588 638 SMART ibrneu5 489 551 IPR002867 -
Csa03g04588 638 ProSiteProfiles RWD domain profile. 144 279 IPR006575 GO:0005515
Csa03g04588 638 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 111 578 - -
Csa03g04588 638 Pfam RWD domain 140 274 IPR006575 GO:0005515
Csa03g04588 638 SUPERFAMILY RING/U-box 577 634 - -
Csa03g04588 638 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 330 417 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04588 K11971 RNF14, ARA54; E3 ubiquitin-protein ligase RNF14 [EC:2.3.2.31] - csv:101211646 1333.16
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04588 Csa-Chr3:39941662 Csa06g00382 Csa-Chr6:3180847 3.02E-17 dispersed
Csa03g04588 Csa-Chr3:39941662 Csa06g01664 Csa-Chr6:14618486 5.90E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g699 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy04g00114 . Blo03g00874 . Bda07g00086 . . Bpe11g00323 . . Sed01g4129 . Cmo19g00236 . . . . . Cpe15g00198 Bhi05g00464 Tan07g2001 Cmetu04g1279 Lac11g2439 Hepe06g1792 . Lcy12g1964 Cla09g01103 Cam09g1156 Cec09g1165 Cco09g1180 . . Cre09g1118 . Csa03g04588 . Cme04g00137
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011677 1 1 1 0 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 1 1 30