Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04589 ATGAGGAACCATGGATCTTCAATTTCGTATCACGAACATCGTGAAGAAGAAAACGAAGAACATGATAAGAAAAAGAGAAAGAATGATGAAGAAGAAGAAGAAGAAGATGGGAAAGAGATGAAGAAGAAGAAGAAGAAAGAAGAAAAAAATAATAAAGTAGCATTTTATAAGTTATTTGCATTTGCTGATTTTTATGATTATGTTCTAATGAGTATTGGTTCAATTGGAGCTTGTATCCATGGTGCTTCTGTTCCTGTCTTCTTCATTTTCTTTGGAAAACTCATTAATATTATTGGTATGGCTTATCTCTTCCCTGAGGCTGCTGCTCCCAAAGTTGCTAAGTACTCTTTGGACTTTTTATATCTCAGTGTGGCAATACTATTTTCATCATGGGCAGAGGTGGCTTGTTGGATGCATAGTGGAGAAAGGCAAGCAGCAAAAATGAGAATGGCATACTTAAGATCAATGTTGAATCAAGATATTAGTCTCTTTGATACCGAAGCTTCTACTGGTGAAGTTATTGCTGCTATTACTAGTGACATTGTTGTTGTTCAAGATGCCATTTCTGAAAAAGTAGGGAACTTTTTGCATTACATAAGCCGGTTTATATCGGGATTTATCATTGGATTTGTGAGAGTATGGCAAATCAGTCTTGTCACATTATCTATTGTCCCTTTGATTGCACTTGCTGGTGGTCTTTATGCTTTTGTCACCATTGGTCTTATTGCCAAAGTAAGAAAATCCTATGTCAAGGCTGGTGAGATTGCTGAAGAGATTCTAGGAAATGTTAGAACAGTTCAAGCATTTGCTGGGGAAGAAAGGGCCGTAAATTTATACAAAGGAGCTCTCAAGAATACCTACAAATATGGTAGAAAAGCAGGGCTGGCTAAGGGGCTGGGCCTGGGATCAATGCATTGTGTCCTTTTCTTGTCATGGGCTCTGTTGGTTTGGTTTACCAGCATTGTTGTTCACAAGGGCATTGCCAATGGTGGAGACTCCTTCACCACAATGCTTAATGTTGTCATTTCTGGCTTGTCACTTGGGCAGGCTGCACCAGACATTTCCGCCTTTGTTCGAGCAAAGGCAGCAGCCTATCCTATTTTTCAGATGATAGAGAGGAACACAGTAAGCAAAAGCAGCTCCAAAACTGGCTGGAAGCTGAATAAGCTTGATGGTTTTATTCAATTCAAGGATGTTAATTTCAGCTACCCATCTCGTCAGGATGTAATTATATTTAATAAGTTATCTCTTGACATTCCTGCTGGCAAGATTGTAGCTCTTGTAGGAGGAAGTGGATCAGGAAAGAGCACGGTGATATCTTTGATCGAACGATTCTATGAACCCCTTTCTGGAGAGATTCTACTAGATGGTCACAACATCAAGGATCTAGACCTCAAGTGGTTTAGGCAACAAATTGGTTTGGTCAATCAAGAACCTGCCCTCTTTGCTACAAGCATTAGGGAGAACATTTTATATGGAAAAGATGATGCTACCCTCGAGGACATCACACGTGCAGCAAAACTTTCTGAGGCTTTATCGTTTATAAACAATCTCCCTGAGAGATTTGAAACTCAGGTTGGTGAGAGAGGGGTCCAATTATCAGGGGGACAAAAACAAAGGATTGCAATATCCCGTGCGATCGTTAAGAATCCATCAATCTTGTTGTTGGATGAGGCAACAAGTGCACTAGATGCAGAATCTGAAAAGAGTGTTCAAGAGGCACTCGATCGTGTCATGGTTGGTCGAACGACTGTAGTAGTGGCTCATCGTCTATCTACCATAAGAAATGCAGATGTGATTGCTGTCGTTCAAGAGGGGAAGATAGTCGAAACCGGAAGCCATGATGAGCTCATTTCAAGGCCAGACAGTGTCTATGCATCGCTTGTCCAATTCCAAGAAACAGCATCTCTGCAACGACATCCCTCGATTGGACAGTTGGGTCGACCACCTAGTATAAAGTACTCTCGAGAATTATCTCGCACTACAACGAGCTTTGGTGCAAGTTTTCGCTCTGAGAAAGAATCTCTTGGACGGATTGGAGTTGATGGAATGGAAATGGAGAAACCAAGGCATGTTTCAGCAAAAAGACTTTACTCCATGGTTGGACCGGATTGGATGTATGGCATTGTCGGCGTCATTGGAGCATTCGTTACAGGATCCCAGATGCCCCTGTTTGCTCTTGGGGTCTCTCAGGCTCTTGTTGCTTTTTACATGGACTGGGATACAACTCAACATGAGATCAAGAAAATTTCTTTGCTTTTCTGTGGCGGTGCAGTTTTAACTGTCATTTTTCATGCAGTTGAGCATCTTTGTTTCGGAATTATGGGAGAGCGACTAACTCTTCGAGTTCGAGAAATGATGTTCCACGCTATTTTGAGGAACGAGATAGGATGGTTTGATGATATGAACAACACAAGTGCTATGCTTTCATCGCGTTTAGAAACTGATGCAACTTTATTACGAACTATCGTTGTCGACCGCTCTACAATTCTTCTGCAGAATCTAGCTTTGGTCGTTGCATCATTCATCATTGCTTTTATATTGAATTGGAGAATCACTCTAGTTGTCCTGGCCACTTATCCATTGATCATCAGTGGTCACATTAGCGAGAAACTTTTTATGCAAGGCTATGGTGGAAATTTGAGCAAAGCATACCTGAAAGCCAATACACTGGCCGGTGAGGCAGTTGGCAACATTAGAACTGTTGCTGCATTTTGTTCAGAGGAGAAGGTCCTTGATCTATATGCTAAGGAGCTAGTTGAGCCCTCAAGACGTTCGCTTAAACGTGGACAGATTGCTGGAATATTCTATGGTGTCTCTCAATTTTTCATCTTTTCATCTTACGGTCTAGCCTTATGGTACGGTTCAGTCTTGATGGGACATGGGCTTGCTAGCTTCAAGTCTGTTATGAAATCATTCATGGTTTTGATAGTAACTGCCTTAGCAATGGGTGAAACTTTGGCACTGGCTCCTGACCTTTTAAAGGGAAACCAAATGGTGGCATCAGTGTTTGAGGTGATGGATCGACAGACAGAGGTATCAGGCGATGTGGGTGAAGAGCTAAATGTGGTGGAGGGTACCATTGAGCTGAGGAATGTTGAGTTCGTCTATCCATCAAGACCAGATGTTATGATCTTCAAAGATTTCAATCTTAAAGTGAGAGCAGGCAAGAGTATAGCCTTAGTTGGCCAAAGCGGATCAGGAAAAAGCTCGGTTCTAGCTCTTATACTGCGATTTTACGATCCAATTGCTGGGAAGGTGATGATTGATGGAAAAGATATTAAAAAACTGAAGCTCAAATCTCTCAGAAAGCACATTGGCCTCGTCCAACAAGAACCAGCTCTTTTCGCCACGTCAATTTACGAGAACATTCTTTATGGGAAAGAAGGAGCATCGGAAGCCGAAGTATTCGAAGCAGCAAAACTCGCCAATGCTCATAACTTCATCAGCGCTCTTCCTGAAGGCTACTCAACAAAAGTTGGTGAAAGAGGGATACAACTCTCTGGTGGGCAACGACAAAGGATTGCCATTGCAAGAGCAGTTCTGAAGAACCCAGAAATACTATTACTGGACGAAGCAACAAGTGCTCTCGATGTCGAATCGGAACGTGTGGTTCAACAAGCGTTAGACAGATTGATGATGAACAGAACAACTGTGGTGGTTGCACATAGGCTTTCCACCATTAAAAACTGTGATCAAATCTCAGTGATTCAAGATGGTAAAATAGTAGAACAAGGGACACATTCAAGCCTATCTGAGAACAAAAATGGAGCTTATTACAAGTTAATCAACATCCAACAACAGCAACAAAGACAGTGA 3819 41.79 MRNHGSSISYHEHREEENEEHDKKKRKNDEEEEEEDGKEMKKKKKKEEKNNKVAFYKLFAFADFYDYVLMSIGSIGACIHGASVPVFFIFFGKLINIIGMAYLFPEAAAPKVAKYSLDFLYLSVAILFSSWAEVACWMHSGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVIAAITSDIVVVQDAISEKVGNFLHYISRFISGFIIGFVRVWQISLVTLSIVPLIALAGGLYAFVTIGLIAKVRKSYVKAGEIAEEILGNVRTVQAFAGEERAVNLYKGALKNTYKYGRKAGLAKGLGLGSMHCVLFLSWALLVWFTSIVVHKGIANGGDSFTTMLNVVISGLSLGQAAPDISAFVRAKAAAYPIFQMIERNTVSKSSSKTGWKLNKLDGFIQFKDVNFSYPSRQDVIIFNKLSLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGHNIKDLDLKWFRQQIGLVNQEPALFATSIRENILYGKDDATLEDITRAAKLSEALSFINNLPERFETQVGERGVQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQEGKIVETGSHDELISRPDSVYASLVQFQETASLQRHPSIGQLGRPPSIKYSRELSRTTTSFGASFRSEKESLGRIGVDGMEMEKPRHVSAKRLYSMVGPDWMYGIVGVIGAFVTGSQMPLFALGVSQALVAFYMDWDTTQHEIKKISLLFCGGAVLTVIFHAVEHLCFGIMGERLTLRVREMMFHAILRNEIGWFDDMNNTSAMLSSRLETDATLLRTIVVDRSTILLQNLALVVASFIIAFILNWRITLVVLATYPLIISGHISEKLFMQGYGGNLSKAYLKANTLAGEAVGNIRTVAAFCSEEKVLDLYAKELVEPSRRSLKRGQIAGIFYGVSQFFIFSSYGLALWYGSVLMGHGLASFKSVMKSFMVLIVTALAMGETLALAPDLLKGNQMVASVFEVMDRQTEVSGDVGEELNVVEGTIELRNVEFVYPSRPDVMIFKDFNLKVRAGKSIALVGQSGSGKSSVLALILRFYDPIAGKVMIDGKDIKKLKLKSLRKHIGLVQQEPALFATSIYENILYGKEGASEAEVFEAAKLANAHNFISALPEGYSTKVGERGIQLSGGQRQRIAIARAVLKNPEILLLDEATSALDVESERVVQQALDRLMMNRTTVVVAHRLSTIKNCDQISVIQDGKIVEQGTHSSLSENKNGAYYKLINIQQQQQRQ* 1273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 39949790 39957168 + CsaV3_3G048950.1 Csa03g04589 525494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04589 1272 ProSitePatterns ABC transporters family signature. 533 547 IPR017871 GO:0005524
Csa03g04589 1272 SMART AAA_5 421 613 IPR003593 -
Csa03g04589 1272 SMART AAA_5 1055 1227 IPR003593 -
Csa03g04589 1272 CDD ABC_6TM_Pgp_ABCB1_D1_like 70 367 - -
Csa03g04589 1272 Gene3D - 392 645 IPR027417 -
Csa03g04589 1272 CDD ABC_6TM_Pgp_ABCB1_D2_like 698 1013 - -
Csa03g04589 1272 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 72 359 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Csa03g04589 1272 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1028 1264 IPR003439 GO:0005524
Csa03g04589 1272 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 51 1267 IPR039421 -
Csa03g04589 1272 SUPERFAMILY ABC transporter transmembrane region 687 1009 IPR036640 GO:0005524|GO:0016021
Csa03g04589 1272 Gene3D ABC transporter type 1, transmembrane domain 6 105 IPR036640 GO:0005524|GO:0016021
Csa03g04589 1272 Gene3D ABC transporter type 1, transmembrane domain 119 997 IPR036640 GO:0005524|GO:0016021
Csa03g04589 1272 ProSitePatterns ABC transporters family signature. 1167 1181 IPR017871 GO:0005524
Csa03g04589 1272 CDD ABC_MTABC3_MDL1_MDL2 394 632 - -
Csa03g04589 1272 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 385 632 IPR027417 -
Csa03g04589 1272 SUPERFAMILY ABC transporter transmembrane region 58 372 IPR036640 GO:0005524|GO:0016021
Csa03g04589 1272 PANTHER ABC TRANSPORTER B FAMILY MEMBER 2 51 1267 - -
Csa03g04589 1272 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 394 630 IPR003439 GO:0005524
Csa03g04589 1272 Pfam ABC transporter transmembrane region 73 342 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Csa03g04589 1272 Pfam ABC transporter transmembrane region 709 981 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Csa03g04589 1272 MobiDBLite consensus disorder prediction 1 44 - -
Csa03g04589 1272 Coils Coil 13 50 - -
Csa03g04589 1272 CDD ABC_MTABC3_MDL1_MDL2 1028 1263 - -
Csa03g04589 1272 Pfam ABC transporter 1047 1195 IPR003439 GO:0005524
Csa03g04589 1272 Pfam ABC transporter 413 561 IPR003439 GO:0005524
Csa03g04589 1272 Gene3D - 1019 1272 IPR027417 -
Csa03g04589 1272 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1022 1266 IPR027417 -
Csa03g04589 1272 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 709 995 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04292 Csa-Chr3:37581797 Csa03g04589 Csa-Chr3:39949790 1.38E-125 dispersed
Csa03g04589 Csa-Chr3:39949790 Csa06g03746 Csa-Chr6:29869786 2.08E-133 dispersed
Csa06g02854 Csa-Chr6:24884792 Csa03g04589 Csa-Chr3:39949790 1.51E-09 dispersed
Csa03g04589 Csa-Chr3:39949790 Csa05g02977 Csa-Chr5:30108267 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04589 K05658 - csv:101219304 2315.42