Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04597 ATGGATTATAGTGGAGGAAACGTGGTTCACGTGATCTCTGGGACGAGCAATGAGAATTGGCCAGGGGAAGTTTGGGCTACGGAAGATGAATACAGAGCTTGGAACAATGGCGGTGATGGGTCTGTTGATACGCCTTCCAATTCGAGTTATGATCAAAGGCAATCTCAAAGCCGGTCCGGTAGCGAACCCCCAAACAAAAAATCCAGAAGCTCACAGGATGTTACATCTTCGAATCGATCGAAAGCGATCGGAAAAATGTTTTTCAAGACCAAACTCTGCTGCAAATTCCGTGCTGGAACTTGTCCTTACATCACAAATTGCAATTTCGCTCATAGCATTGAGGAGCTCAGGCGACCACCACACAATTGGCAGCAGGAAATTGTGGCCGCCCATGAGGAAGAGAAGGCGGTATTATCGGAGCCAAGGGAGGAATTTCAAATTCCTTCACTTGGGACATCGAATTTTGGTTCTGAATCGCAGAGGTCGTATAAAGGTCGACACTGCAAGAAGTTTTACACAGAGGAGGGGTGTCCGTATGGGGATAGTTGTACGTTTCTTCATGATGAGCAGTCAAAGAATCGAGAGAGTGTAGCAATAAGCTTGGGTCCTGGTGGATACAGTGGTGGTGGTGGTGGTGGTGGTGGAGGTGGTGGTGGTGGTTCAGGAAATGGATCCAACACAAAGCCTTCAAATTGGAAAACAAGGATTTGTAACAAGTGGGAGTTGACAGGATATTGTCCATTTGGGAACAAATGCCATTTTGCTCATGGTGCTGCTGAAACTAGAGACTCTTCAGCTGCACCTCCTGACCTGAAGCAGGGTGTATTGCCAAAAGCTCCTGGCGATACTTTGGTTGCTTCTGTTCCTTCAGCACCTCATTCAGATGTTTACCATGTGGTGGTTCCATCACAGAGGTCGACCATTGTAATTCAAAGGCCAGGGCAGAGAACTCATCAGAAGTGGAAGGGTCCCGATAAAATCAGTCGGATATATGGTGATTGGATTGATGACATTGAATAA 1020 46.76 MDYSGGNVVHVISGTSNENWPGEVWATEDEYRAWNNGGDGSVDTPSNSSYDQRQSQSRSGSEPPNKKSRSSQDVTSSNRSKAIGKMFFKTKLCCKFRAGTCPYITNCNFAHSIEELRRPPHNWQQEIVAAHEEEKAVLSEPREEFQIPSLGTSNFGSESQRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSKNRESVAISLGPGGYSGGGGGGGGGGGGGSGNGSNTKPSNWKTRICNKWELTGYCPFGNKCHFAHGAAETRDSSAAPPDLKQGVLPKAPGDTLVASVPSAPHSDVYHVVVPSQRSTIVIQRPGQRTHQKWKGPDKISRIYGDWIDDIE* 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 39993692 39997220 + CsaV3_3G049030.1 Csa03g04597 525502

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04597 339 Gene3D - 224 264 - -
Csa03g04597 339 Gene3D - 82 118 - -
Csa03g04597 339 SUPERFAMILY CCCH zinc finger 228 262 IPR036855 GO:0046872
Csa03g04597 339 SMART c3hfinal6 231 258 IPR000571 GO:0046872
Csa03g04597 339 SMART c3hfinal6 162 189 IPR000571 GO:0046872
Csa03g04597 339 SMART c3hfinal6 87 113 IPR000571 GO:0046872
Csa03g04597 339 ProSiteProfiles Zinc finger C3H1-type profile. 231 259 IPR000571 GO:0046872
Csa03g04597 339 MobiDBLite consensus disorder prediction 39 78 - -
Csa03g04597 339 MobiDBLite consensus disorder prediction 139 158 - -
Csa03g04597 339 Coils Coil 335 339 - -
Csa03g04597 339 ProSiteProfiles Zinc finger C3H1-type profile. 87 114 IPR000571 GO:0046872
Csa03g04597 339 Gene3D - 152 202 - -
Csa03g04597 339 PANTHER CCCH ZINC FINGER/TIS11-RELATED 21 336 IPR045877 GO:0003729
Csa03g04597 339 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 12-LIKE 21 336 - -
Csa03g04597 339 SUPERFAMILY CCCH zinc finger 85 118 IPR036855 GO:0046872
Csa03g04597 339 SUPERFAMILY CCCH zinc finger 161 190 IPR036855 GO:0046872
Csa03g04597 339 MobiDBLite consensus disorder prediction 31 78 - -
Csa03g04597 339 MobiDBLite consensus disorder prediction 198 230 - -
Csa03g04597 339 ProSiteProfiles Zinc finger C3H1-type profile. 162 190 IPR000571 GO:0046872
Csa03g04597 339 Pfam CCCH-type zinc finger 166 188 IPR041367 -
Csa03g04597 339 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 88 112 IPR000571 GO:0046872
Csa03g04597 339 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 232 257 IPR000571 GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04597 - - - csv:101210161 650.588
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00171 Csa-Chr2:1192919 Csa03g04597 Csa-Chr3:39993692 1.46E-51 dispersed
Csa03g04597 Csa-Chr3:39993692 Csa04g02021 Csa-Chr4:20338680 3.26E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g684 . . . . . . Bma07g00926 Bma14g00159 . . Cma02g01621 . Car02g01380 . . . Cpe05g00170 . . . . . . . . . . . . . . . . . . . . Chy04g00106 . Blo03g00868 Blo19g00195 . Bda09g00731 Bpe08g00827 Bpe11g00328 . . . Cmo02g01666 Cmo19g00243 . . . . . Cpe15g00204 Bhi05g00481 . . . . . . . . . . . . . . Csa03g04597 . Cme04g00130
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004224 1 3 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 0 1 4 2 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31443 PF00642 zf-CCCH 1.10E-10 CL0537 Csa TF