Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04599 ATGAGTCTTGATGCTCTTTCTTCCAATGACTTGTTCAACTTCATCATCTACGACACGATCTCCGCAACGCCCAACACCTCCAATAACAACGTCGTCCCTCACCATGACTCCTCCGAGAACACTTTCCTATCCGACGACAAGTGCTCGAAACCCAATTCGCGAAAACGCTGCACGAGTGAGGTAGAGATTAGCAACCGAGTGGTGGTGCCATTGTCGACGACGACGACGACGACCACCACCACCACTCAACATGGGAAGAAGAAAAGAAAGAGAAAAGCAAAGGTTTGTAAGAACAAAGAAGAAGCTGAAACACAAAGAATGACACACATTGCTGTTGAAAGGAACCGCCGTAAACAAATGAATGAACATCTTTCGGTTTTACGTTCACTCATGCCAGAATCCTATGTTCAAAGGGGTGACCAAGCCTCCATAGTAGGTGGTGCCGTTGAGTTTGTGAAGGAATTGGAGCATCTTCTGTCAACTTTAGAAGCCAAGAAGCTACAAATCTTACAACAAGAAGTAGATCAACATCAAGAACAAGAGATGAATGAAGATTCAAGGATAAGAAAAAATGATAATAATGATAATAACAATAAGTTGTTTTCATTTGCAAGTCTATTGATGAATAATTCAGATCAAAATAACTATTCATCACAATATTCAACAAAATACACATCAAAATCCAAAGCCTCTTCAGCTGACATTGAAGTCACTTTGATTGAAACTCATGCAAATCTTAGAATCCTCTCAACAAGAAGCCATAGACAACTCTTGAAGCTCATTGCTGGTTTGCAAGCTCTTCGTCTCACTATTCTTCATCTAAATCTCACTGATTTTCATCCATTGGTTCTTTACTCCATTAGCCTCAAGGTTGAAGAAGGATGCCAACTAAGATCAGTAGATGACATAGCAGCAGCAGCACATCATATGGTAAGAATAATTGAGGAAGAAGCCGTTTTATGTTAA 966 40.27 MSLDALSSNDLFNFIIYDTISATPNTSNNNVVPHHDSSENTFLSDDKCSKPNSRKRCTSEVEISNRVVVPLSTTTTTTTTTTQHGKKKRKRKAKVCKNKEEAETQRMTHIAVERNRRKQMNEHLSVLRSLMPESYVQRGDQASIVGGAVEFVKELEHLLSTLEAKKLQILQQEVDQHQEQEMNEDSRIRKNDNNDNNNKLFSFASLLMNNSDQNNYSSQYSTKYTSKSKASSADIEVTLIETHANLRILSTRSHRQLLKLIAGLQALRLTILHLNLTDFHPLVLYSISLKVEEGCQLRSVDDIAAAAHHMVRIIEEEAVLC* 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 40003473 40010806 + CsaV3_3G049050.1 Csa03g04599 525504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04599 321 Coils Coil 152 187 - -
Csa03g04599 321 Pfam Helix-loop-helix DNA-binding domain 105 156 IPR011598 GO:0046983
Csa03g04599 321 PANTHER MAX DIMERIZATION, MAD 1 320 - -
Csa03g04599 321 SMART finulus 110 161 IPR011598 GO:0046983
Csa03g04599 321 Gene3D - 93 191 IPR036638 GO:0046983
Csa03g04599 321 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 104 155 IPR011598 GO:0046983
Csa03g04599 321 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 103 172 IPR036638 GO:0046983
Csa03g04599 321 MobiDBLite consensus disorder prediction 75 102 - -
Csa03g04599 321 PANTHER TRANSCRIPTION FACTOR BHLH71 1 320 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02175 Csa-Chr2:19575197 Csa03g04599 Csa-Chr3:40003473 2.15E-70 dispersed
Csa03g01369 Csa-Chr3:10293079 Csa03g04599 Csa-Chr3:40003473 3.44E-35 dispersed
Csa03g02197 Csa-Chr3:19073471 Csa03g04599 Csa-Chr3:40003473 6.64E-06 dispersed
Csa03g04599 Csa-Chr3:40003473 Csa05g01831 Csa-Chr5:21650877 1.47E-12 dispersed
Csa03g04599 Csa-Chr3:40003473 Csa03g04609 Csa-Chr3:40071324 1.25E-11 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31444 PF00010 HLH 1.10E-10 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04599 - - csv:101210413 545.428