Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04600 ATGGGGTCAGGGTCGTATGGCAACCCTAAAACTTGGATACCATATATGAGCAACAAAGATTGCTCTCAAGGTTTCTGCAGTGTATATTGTCCTCAATGGTGCTATATCATGTTTTCACCTCCACCACCCTTGGAGTTTCCAGATAATTCAGGCCCACATTTTTCACCTCTTGTTATTGCAATTATTGGAATTCTGGCCAGTGCTTTCCTTCTTGTAACCTATTACACCATTATTTCAAAGTATTGTGGCAACACAAATCGTTTGTCTGGAACCGGAAATCATGACCCAAGTGAGGAATATGAAGATAATCACAATCCAACATTTCATGAGCCATGGCATGTTGCCACAACTGGCTTGGATGAAGCACTTATCAAGTCCATTACTGTTTGCAAGTACAAGAGAGAAGATGGGTTGGTTGAAGGCTCTGATTGCTCCGTTTGCCTTAGTGAGTTTCAAGAAGATGAAAGCCTTCGATTGTTGCCTAAATGCAGCCATGCTTTTCATCTTCAATGCATTGATACATGGCTCAAATCACACTCCAATTGTCCCTTATGTCGTGCTAATATCATCTCTATCAATGCTGGTTCTCCAGTTCAACTCCCTGCAAGCACTGCATATCCCATAACTAACGAGACCGTGCCAGAGACTTCTCAGGATAATGACTATGAGGCTGTTTCACTAGATTCTGGACAAAGTTTTAGCAATGAGGATGGAAAGAACTCGGTTCGCGCTTTCAGCGACCTTGGAAATCTGGAGAAAAGAGATACTATCATTGAGCTTAGAGATGGAAGATTGCAGCAAATTAGAAGGTCAATTTCAATGGATCATTGCAGCCAAAACCATATTATTATTGCCGATGTTCTACGTCTAAATGAAGATGATTTTGGAGGTATTGATGAAGCAGGAAGTTCAGGTGATGTCGGATCATCTAAACATTCTGTAGGAGAAGACAGTAGGTCAAGTCATAGAAAAAGAATCTTGCATTGTGTGATGAGTCCTGTTTCAATGAAGAGATCATTTTCAAGTGGAAGACTTTCTCTCACCAAGCATGGGAGAGAACACAGGGGAATTGCCCCTGTCCCAAATTTTACAACACAGAATCAGAATGGTTTGCAGTTTTGA 1122 41.27 MGSGSYGNPKTWIPYMSNKDCSQGFCSVYCPQWCYIMFSPPPPLEFPDNSGPHFSPLVIAIIGILASAFLLVTYYTIISKYCGNTNRLSGTGNHDPSEEYEDNHNPTFHEPWHVATTGLDEALIKSITVCKYKREDGLVEGSDCSVCLSEFQEDESLRLLPKCSHAFHLQCIDTWLKSHSNCPLCRANIISINAGSPVQLPASTAYPITNETVPETSQDNDYEAVSLDSGQSFSNEDGKNSVRAFSDLGNLEKRDTIIELRDGRLQQIRRSISMDHCSQNHIIIADVLRLNEDDFGGIDEAGSSGDVGSSKHSVGEDSRSSHRKRILHCVMSPVSMKRSFSSGRLSLTKHGREHRGIAPVPNFTTQNQNGLQF* 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 40005483 40010806 - CsaV3_3G049060.1 Csa03g04600 525505

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04600 373 CDD RING-H2_EL5_like 143 186 - -
Csa03g04600 373 ProSiteProfiles Zinc finger RING-type profile. 144 186 IPR001841 -
Csa03g04600 373 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 119 193 IPR013083 -
Csa03g04600 373 MobiDBLite consensus disorder prediction 300 323 - -
Csa03g04600 373 SMART ring_2 144 185 IPR001841 -
Csa03g04600 373 PANTHER E3 UBIQUITIN-PROTEIN LIGASE OS04G0590900-LIKE 266 353 - -
Csa03g04600 373 PANTHER E3 UBIQUITIN-PROTEIN LIGASE OS04G0590900-LIKE 7 224 - -
Csa03g04600 373 SUPERFAMILY RING/U-box 125 192 - -
Csa03g04600 373 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 266 353 IPR044675 -
Csa03g04600 373 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 7 224 IPR044675 -
Csa03g04600 373 Pfam Ring finger domain 143 186 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04600 - - - csv:101210656 778.474
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00883 Csa-Chr2:8237146 Csa03g04600 Csa-Chr3:40005483 1.90E-74 dispersed
Csa02g01220 Csa-Chr2:11996229 Csa03g04600 Csa-Chr3:40005483 6.65E-27 dispersed
Csa02g02174 Csa-Chr2:19570529 Csa03g04600 Csa-Chr3:40005483 1.09E-48 dispersed
Csa03g01059 Csa-Chr3:8460031 Csa03g04600 Csa-Chr3:40005483 5.10E-95 dispersed
Csa03g01220 Csa-Chr3:9415220 Csa03g04600 Csa-Chr3:40005483 1.23E-20 dispersed
Csa03g02251 Csa-Chr3:19876266 Csa03g04600 Csa-Chr3:40005483 5.05E-31 dispersed
Csa03g04600 Csa-Chr3:40005483 Csa06g03136 Csa-Chr6:26772192 2.40E-45 dispersed
Csa06g01720 Csa-Chr6:15140722 Csa03g04600 Csa-Chr3:40005483 2.79E-27 dispersed
Csa03g04598 Csa-Chr3:39998241 Csa03g04600 Csa-Chr3:40005483 7.91E-19 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g679 . . . . . . . Bma14g00158 . . Cma02g01617 . Car02g01377 . . . Cpe05g00173 . . . . . . . . . . . . . . . . . . . . Chy04g00102 . . . Bda07g00092 . . Bpe11g00330 . . Sed02g1537 Cmo02g01662 Cmo19g00246 . . . . . Cpe15g00207 Bhi05g00484 Tan07g1986 Cmetu04g2051 Lac11g2423 Hepe06g1781 . Lcy12g1954 . . . . . . . . Csa03g04600 . Cme04g00127
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001850 2 2 1 2 2 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 1 2 4 2 2 68