Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04609 ATGACGGACTATAGATTACCCCCCACCATGAATCTCTGGGCGGATGAGAACGCTTCCATGATGGATGTTTTCATCAACACCGATCTGAGTTCTTTCTGGGTTACACCGCCGCAGTCACAGCAACTCCCTCAGCCCTCTTATTCCACGCCCACTGACCCTAGTAAGGCCGTTGGTCAAACACCACCGCCGCCGCCCCCGTCGTCCATGTCGGTTTTTAACCAAGAGACTCTTATGCAGCGTCTTCAAACATTGATTGAAGGTGCTCAAGAGAACTGGACCTATGCTATTTTCTGGCAGTCTTCGTATGATTATTCCGGCGGTACTGTGTTGGGGTGGGGAGATGGGTATTATAAAGGTGAGGAAGATAAAGGGAAAGAGAAAGCTAAATCCAGTAGTTCGATAGCAGAGCAAGAGCATCGGAAGAAGGTACTTCGTGAGCTTAACTCTCTCATTTCTGGTTCTCCTACCTCTGAAGCTGATGCCGTTGATGAGGTTGTTACCGACACCGAGTGGTTTTACTTGGTCTCGATGACTCAATCATTTATCTCCGGTGTTGGATTGCCGGGGCAGGCGTTTTTCGATTCCAATCCTATTTGGGTTGCGGGTTCGGATCGACTTGCGAGCTCTTTCTGTGAACGAGCTCGTCAGGGTCAGGTTTTCGGGTTACAGACTATGGTTTGTATACCGTCGGCGAATGGAGTTGTTGAATTGGGTTCGAGTGATTTGATTTTACAGAGCTCCGATCTGATGAATAAGGTTAGGGTTTTGTTTAATTTCAACAATCTGGAAGTGGAAACTTGGCCAATTAGTGGTGTTGACCAAGGGGAGAATGATCCTTCTTCGCTTTGGATTAGTGAACCATCTTCAAACGCCATTGAAATTGCGAATCCTGTTCCTTCTGCTTCAGCTCCAACTCCAAGCACAACAAACAGCCAACCCATTTCCAAAATTACAACAGAGACGATCGAGAATCCCAATAAATCTAGTGTTGTAGTTGAAACTCCAAGTTCTTCTGTTCCTCCTCCTTCTCAGAAAACTCATCGACAGTCTCAGCCGACTCAAACACAGAGCTTCTTCACCAACAGGGAATTGAATTTCTCTGAATTTGGGTATGAGAATGGTCGATTGAAGGAAGGGAATTCCACTTCGTTGAAGCCGGAATCCGGTGAGATTCTGAATTTTGGGGAGAGTAAGAGGAGTAGTTCTTATCCCAACACAGATAACAACTTACCTTCAGGGAATTCCTTATTTGGAGGGGATGAGAATAAGAAGAAGAGATCCCCAACTTCACGTGGGAGTAACGAAGAAGGGATGCTTTCTTTTACTTCTGTTGTGATTCTTCCTTCCTCTGGAGGTGTGAAATCAGGTGTTTGCGCTGGCGATTCCGATCACTCCGATCTTGAAGCTTCCGTAATTCGTGAGGCGGAGAGTAGTAGAGTGGTGGAGCCGGAGAAGCGGCCTCGAAAAAGAGGGCGAAAGCCAGCAAATGGTAGAGAAGAACCATTGAATCATGTTGAAGCAGAGAGGCAAAGGAGAGAAAAGCTTAACCAAAGATTCTATGCTCTTCGAGCTGTTGTTCCAAATGTATCCAAAATGGATAAAGCTTCACTCCTTGGTGATGCTATCTCTTACATCAATGAACTTAGAGGGAAGCTTCAAACTGCTGAATCAGATAAGGAAGATCTACAGAAGCAATTGGATTCAGTGAAGAAGATGATGATGTCCTCTTCTAGTAAAGATTCATGCATGTCAAGCTCAAATCAACCCCCACCAGATCAAGACATAAAATCATCAAACATAAACCATAATGATATCGAAACCGATATCGATGTAAAGATCATCAGTTGGGATGCAATGATCCGAATCCAATCTAGTAAGAAAAACCATCCTGCTGCACGGTTGATGGCAGCTCTTGAGGAACTTGACTTGGATATAAACCACGCGAGCATCTCGGTTGTCAATGATCTCATGATCCAACAGGCAACCGTGAAGATGGGGAGTCGGCTATACACTCAAGAGCAGTTAAGGATAGCATTATTGTCGAAAATAGGCGCAAGTACTCGGTAG 2067 45.23 MTDYRLPPTMNLWADENASMMDVFINTDLSSFWVTPPQSQQLPQPSYSTPTDPSKAVGQTPPPPPPSSMSVFNQETLMQRLQTLIEGAQENWTYAIFWQSSYDYSGGTVLGWGDGYYKGEEDKGKEKAKSSSSIAEQEHRKKVLRELNSLISGSPTSEADAVDEVVTDTEWFYLVSMTQSFISGVGLPGQAFFDSNPIWVAGSDRLASSFCERARQGQVFGLQTMVCIPSANGVVELGSSDLILQSSDLMNKVRVLFNFNNLEVETWPISGVDQGENDPSSLWISEPSSNAIEIANPVPSASAPTPSTTNSQPISKITTETIENPNKSSVVVETPSSSVPPPSQKTHRQSQPTQTQSFFTNRELNFSEFGYENGRLKEGNSTSLKPESGEILNFGESKRSSSYPNTDNNLPSGNSLFGGDENKKKRSPTSRGSNEEGMLSFTSVVILPSSGGVKSGVCAGDSDHSDLEASVIREAESSRVVEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELRGKLQTAESDKEDLQKQLDSVKKMMMSSSSKDSCMSSSNQPPPDQDIKSSNINHNDIETDIDVKIISWDAMIRIQSSKKNHPAARLMAALEELDLDINHASISVVNDLMIQQATVKMGSRLYTQEQLRIALLSKIGASTR* 689
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 40071324 40074834 + CsaV3_3G049150.1 Csa03g04609 525514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04609 688 MobiDBLite consensus disorder prediction 296 358 - -
Csa03g04609 688 Gene3D - 498 576 IPR036638 GO:0046983
Csa03g04609 688 CDD bHLH_AtAIB_like 496 567 - -
Csa03g04609 688 MobiDBLite consensus disorder prediction 475 509 - -
Csa03g04609 688 MobiDBLite consensus disorder prediction 394 437 - -
Csa03g04609 688 MobiDBLite consensus disorder prediction 35 55 - -
Csa03g04609 688 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 499 548 IPR011598 GO:0046983
Csa03g04609 688 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 502 574 IPR036638 GO:0046983
Csa03g04609 688 SMART finulus 505 554 IPR011598 GO:0046983
Csa03g04609 688 PANTHER TRANSCRIPTION FACTOR MYC2 13 684 - -
Csa03g04609 688 MobiDBLite consensus disorder prediction 35 68 - -
Csa03g04609 688 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 77 257 IPR025610 -
Csa03g04609 688 Coils Coil 545 572 - -
Csa03g04609 688 MobiDBLite consensus disorder prediction 394 416 - -
Csa03g04609 688 MobiDBLite consensus disorder prediction 570 601 - -
Csa03g04609 688 PANTHER MYC 13 684 IPR045084 GO:0003700|GO:0006355
Csa03g04609 688 Pfam Helix-loop-helix DNA-binding domain 503 548 IPR011598 GO:0046983
Csa03g04609 688 MobiDBLite consensus disorder prediction 570 598 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04609 Csa-Chr3:40071324 Csa06g00894 Csa-Chr6:7177946 2.07E-25 dispersed
Csa07g00647 Csa-Chr7:4647975 Csa03g04609 Csa-Chr3:40071324 1.38E-15 dispersed
Csa03g00085 Csa-Chr3:656062 Csa03g04609 Csa-Chr3:40071324 5.48E-20 transposed
Csa03g04599 Csa-Chr3:40003473 Csa03g04609 Csa-Chr3:40071324 1.25E-11 transposed
Csa06g02322 Csa-Chr6:20849605 Csa03g04609 Csa-Chr3:40071324 2.10E-07 transposed
Csa03g00171 Csa-Chr3:1295970 Csa03g04609 Csa-Chr3:40071324 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31446 PF14215 bHLH-MYC_N 1.70E-54 CL0161 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04609 K13422 - csv:101218165 1246.88