Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04616 ATGCATTTACACGCCTCCTCCTCCCTCATCTACCTCTGCTCCGGTCAGTTTTCAACCTTCCTTCAACTCTTTTCATTCTTCACTAATGCTCCTCTCTTTCCTTTCAGCTTCCAGATTTCATTTATTTTCACCCATATTTCACTTCTCTCTTCTTCTATACGATTGTTAAAGAACTTAAAAGCGTGCACAGTGTTTATCAATCATATGGCAGACGTGGCGAAAGATCTTCTTGCTGGGACTCTTGGGGGAGCAGCTCAATTGATATGTGGGCACCCATTTGATACAATTAAGGTCAAGCTCCAAAGCCAACCTATCCCCCTTCCTGGCCAACGTCCCAAGTATTCTGGAGCGATGGATGCTGTCAGACAAACTTTAGCTTCAGAAGGCCCAAGAGGTTTGTATAAAGGTATGGGAGCTCCGTTGGCTACAGTTGCTGCACAAAATGCTGTTCTCTTCACTGTCAGGGGACAACTAGAGTCCTTCTTTAGGCCTTATCCCGGTGCCTCCCTTGAAGTTAAGCACCAAGTAGTTTGTGGGGCTGGGGCTGGCGTTGCTGTGTCTCTTGTAGCTTGTCCAACTGAGTTGATCAAATGCAGACTGCAAGCTCAGAGTGCACTAGCAACATCCGGTTCAGTTGGTGTGGCAGTGAGGTATGGTGGTCCGATGGATGTAGCCAAGCATGTTTTCCAATCGCAAGGAGTGAAGGGTCTTTTCAAGGGTTTGGTTCCAACTTTGGCAAGAGAGGTGCCTGGGAATGCAGTGGTTTTTGGTGTATATGAAATGCTAAAACAACACTTTGCAGGAGGTCGAGACACTTCTAATCTAGGAAGAGGGTCTCTGATGGTGGCTGGTGGTATATCTGGAGCTGCCTTCTGGCTAGCTGTGTATCCAACCAATGTGGTGAAGAGTGTGATTCAAGTGGATGATTTCAAGAACCCAAAGTTCTCTGGTTCTATTGATGCTTTCAGAAAAATCATGGCTTTAGAAGGAGTTAAAGGCCTATACAAAGGTTTTGGACCTGCTATGGCACGTAGTGTCCCAGCTAATGCTGTATGCTTCTTGAAAAGCAGAAAAGATAGCGGATCCCTCCAGCCGAATAAAGGGTGCTATGAAAATGTAGCTCCTTGTACGGTCCGGTCTTCCATTTCTGCTCTTCCTCACTTCAGCTTATTTCAGGAGTGCAAAGTGTGTGTCATTGATATGGGAGATGTGGCGAAAGATCTTGCTGCTGGAACCGCTGGGGGAGCAGCTCTATTGATATGTGGGCACCCATTTGATACAATTAAGGTCAAGCTCCAAAGCCAACCTGTTCCCCTTCCTGGCCAACGACCCAAGTATTCTGGAGCGATGGATGCGCTCAAACAAACCTTAGCTTCAGAAGGCCCAAGAGGTTTGTACAAAGGTATGGGAGCTCCGTTGGCTACAGTTGCTGCACAAAATGCTGTTCTCTTCACTGTCAGAGGACAACTAGAGTCCTTCTTTAGGACTTATCCTGGTGCTTCCCTTGAAGTTAAGCAACAAGTGGTTTGTGGGGCTGGGGCTGGCATTGCAGTCTCTCTTGTAGCTTGTCCAACTGAGTTGATTAAGTGCAGACTACAAGCTCAGAGTGCATTAGCAGCATCCAATTCAGTTGGTGTGGCAGTGAAGTACGGTGGTCCAATGGATGTAGCCAAGCATGTTCTAAAATCACATGGAATAAATGGTCTTTTCAAGGGTATGGTTCCAACTTTGGCAAGAGAGGTGCCTGGGAATGCAGTGGTTTTTGGTGTATATGAATTGCTAAAACAGCAGTTTGCAGGAGGTCGAAAGACTTCTAATCTTGGAAGAGGGTCTCTGATGGTGGCTGGCGGTGTATCTGGAGCTGCTTACTGGCTAGCTGTGTATCCAACTGATGTTATCAAAAGTGTGATTCAAGTAGATGATTTCAAGAACCCAAAATTCTCTGGTTCTATGGATGCTTTCAGAAAAATCTTGGCCTTAGAAGGAGTTAAAGGCCTATACAAAGGTTTTGGACCTGCCATGCTTCGAAGTGTCCCTGCCAATGCAGCATGCTTCTTGGTCTATGAAATCACCAGATCCAGTTTAGGCTAA 2091 46.2 MHLHASSSLIYLCSGQFSTFLQLFSFFTNAPLFPFSFQISFIFTHISLLSSSIRLLKNLKACTVFINHMADVAKDLLAGTLGGAAQLICGHPFDTIKVKLQSQPIPLPGQRPKYSGAMDAVRQTLASEGPRGLYKGMGAPLATVAAQNAVLFTVRGQLESFFRPYPGASLEVKHQVVCGAGAGVAVSLVACPTELIKCRLQAQSALATSGSVGVAVRYGGPMDVAKHVFQSQGVKGLFKGLVPTLAREVPGNAVVFGVYEMLKQHFAGGRDTSNLGRGSLMVAGGISGAAFWLAVYPTNVVKSVIQVDDFKNPKFSGSIDAFRKIMALEGVKGLYKGFGPAMARSVPANAVCFLKSRKDSGSLQPNKGCYENVAPCTVRSSISALPHFSLFQECKVCVIDMGDVAKDLAAGTAGGAALLICGHPFDTIKVKLQSQPVPLPGQRPKYSGAMDALKQTLASEGPRGLYKGMGAPLATVAAQNAVLFTVRGQLESFFRTYPGASLEVKQQVVCGAGAGIAVSLVACPTELIKCRLQAQSALAASNSVGVAVKYGGPMDVAKHVLKSHGINGLFKGMVPTLAREVPGNAVVFGVYELLKQQFAGGRKTSNLGRGSLMVAGGVSGAAYWLAVYPTDVIKSVIQVDDFKNPKFSGSMDAFRKILALEGVKGLYKGFGPAMLRSVPANAACFLVYEITRSSLG* 697
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 40103772 40110187 - CsaV3_3G049220.1 Csa03g04616 525521

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04616 696 Pfam Mitochondrial carrier protein 503 599 IPR018108 -
Csa03g04616 696 Pfam Mitochondrial carrier protein 172 267 IPR018108 -
Csa03g04616 696 Pfam Mitochondrial carrier protein 404 496 IPR018108 -
Csa03g04616 696 Pfam Mitochondrial carrier protein 72 162 IPR018108 -
Csa03g04616 696 Pfam Mitochondrial carrier protein 281 354 IPR018108 -
Csa03g04616 696 Pfam Mitochondrial carrier protein 613 694 IPR018108 -
Csa03g04616 696 PANTHER MITOCHONDRIAL CARRIER PROTEIN 69 355 - -
Csa03g04616 696 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 401 696 - -
Csa03g04616 696 PANTHER MITOCHONDRIAL CARRIER PROTEIN 401 696 - -
Csa03g04616 696 SUPERFAMILY Mitochondrial carrier 403 689 IPR023395 -
Csa03g04616 696 SUPERFAMILY Mitochondrial carrier 69 354 IPR023395 -
Csa03g04616 696 ProSiteProfiles Solute carrier (Solcar) repeat profile. 607 694 IPR018108 -
Csa03g04616 696 Gene3D Mitochondrial carrier domain 399 695 IPR023395 -
Csa03g04616 696 Gene3D Mitochondrial carrier domain 65 358 IPR023395 -
Csa03g04616 696 ProSiteProfiles Solute carrier (Solcar) repeat profile. 405 493 IPR018108 -
Csa03g04616 696 ProSiteProfiles Solute carrier (Solcar) repeat profile. 70 161 IPR018108 -
Csa03g04616 696 ProSiteProfiles Solute carrier (Solcar) repeat profile. 170 265 IPR018108 -
Csa03g04616 696 ProSiteProfiles Solute carrier (Solcar) repeat profile. 505 597 IPR018108 -
Csa03g04616 696 ProSiteProfiles Solute carrier (Solcar) repeat profile. 275 362 IPR018108 -
Csa03g04616 696 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 69 355 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04616 K15109 SLC25A20_29, CACT, CACL, CRC1; solute carrier family 25 (mitochondrial carnitine/acylcarnitine transporter), member 20/29 - csv:101219352 561.607
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00175 Csa-Chr3:1314111 Csa03g04616 Csa-Chr3:40103772 1.25E-165 dispersed
Csa03g04616 Csa-Chr3:40103772 Csa07g02237 Csa-Chr7:20987025 5.15E-09 dispersed
Csa03g04615 Csa-Chr3:40099548 Csa03g04616 Csa-Chr3:40103772 1.01E-17 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g666 Blo02g00995 . . Bda08g00627 Bpe05g00531 . . . Cmo06g00661 Cmo16g01204 Cma02g01610 . Car02g01369 . Sed08g2255 Cpe14g00957 Cpe05g00181 Bhi11g00152 Tan01g2183 Cmetu12g1582 . . . . Cla10g00163 Cam10g0164 Cec10g0174 Cco10g0173 Clacu10g0165 Cmu10g1014 Cre10g0424 . . . . Lsi07g01202 . Chy04g00087 Cme06g02477 . . . . . . Bma05g00714 Bma12g00205 Sed01g4104 Cmo02g01653 Cmo19g00255 Cma06g00653 Cma16g01153 Car06g00583 Car16g01093 . Cpe15g00218 Bhi05g00507 Tan07g1971 Cmetu04g3079 Lac11g2408 Hepe06g1025 . Lcy12g1942 Cla09g01136 Cam09g1193 Cec09g1207 Cco09g1228 . . Cre09g1153 . Csa03g04616 Chy06g02139 Cme04g00111
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0020253 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 4