Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04617 ATGGATTCACTTGATACTCCACCTCCCCCACTTTCTGCACCCTCCAACATGGCCGTCGGAGGACAACCCGCGTATTCACCCGCCAACAACAATGCCTCCTCCACCATTGCTCTCAATCAACCTTCAGCTCAAATGATCCCCCCTTCATCCCGATTTCCCTTTAACCACCCCGTGATCCCACCTTCATCCGTACCTTTGGATTCTCTCAACGTTTCTCCTTACGACGGATCGCATTCCGCTAATTTCAACGTTGATTCCGGTAAGAAAAGGAGAGGCCGCCCCAGGAAGTACGCTCCTGATGCTAACAACATTGCCTTGGGTTTGGCTCCTACACCCACTGTTGCCTCTTCTCTTCCTCACGGAGATTTGACCGCCACTCCTGATTCGGAACAACCCGCCAGGAAAACCAGAGGAAGGCCACCGGGGTCCGGAAAGAAGCAATCCAATTCCATTGGTTCAGGTGGAACTGGTTTTACTCCTCATGTCTTATTGGCGAAGCCTGGAGAGGATGTAGCAGCCAAAATTTTGTCCTTCTCACAGCAAGGACCACGAACGGTCTTCATTCTCTCTGCAAATGGTACTCTCAGTAATGCTACCCTTCGACACTCAGCATCGTCTGGTGGTTCTGTGTCATATGAGGGGCACTATGATATTATCTCTCTGTCAGGCTCGTTTTTGCTGTCAGAGAATAATGGAACTCGAAGCAGAACAGGTGGTTTGAGTGTGCTACTGGCTGGATCAAATGGACAGGTTCTTGGCGGTGGAGTTGCGGGAATGTTAATGGCAAGTTCTCAAGTACAGGTGATTGTGGGAAGTTTTCTAGAGGATGATAAAAAGTCCAACACAAGTATGCTGAACTCTGGATCTTCATCTGCACCATCACAAATGATAAACTTTGGTGGTGGTGGTGGTGGTGGGCTAGCAGCAGCAGCAGCTAGCCCTCCGTCGTTAGGGGGATCGAGCGGGGAGTCGTCTGGTGAAAATGGAGATAGCCCTCTTAATAATAGGCATCCTGGAATGTTCAATAATTCTAGCCAGCCAATCCACAATCTTCAAATGTACCAATTATGGGCAGGCCAAACACAGCAGTGA 1092 49.54 MDSLDTPPPPLSAPSNMAVGGQPAYSPANNNASSTIALNQPSAQMIPPSSRFPFNHPVIPPSSVPLDSLNVSPYDGSHSANFNVDSGKKRRGRPRKYAPDANNIALGLAPTPTVASSLPHGDLTATPDSEQPARKTRGRPPGSGKKQSNSIGSGGTGFTPHVLLAKPGEDVAAKILSFSQQGPRTVFILSANGTLSNATLRHSASSGGSVSYEGHYDIISLSGSFLLSENNGTRSRTGGLSVLLAGSNGQVLGGGVAGMLMASSQVQVIVGSFLEDDKKSNTSMLNSGSSSAPSQMINFGGGGGGGLAAAAASPPSLGGSSGESSGENGDSPLNNRHPGMFNNSSQPIHNLQMYQLWAGQTQQ* 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 40112092 40116032 + CsaV3_3G049230.1 Csa03g04617 525522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04617 363 Pfam Plants and Prokaryotes Conserved (PCC) domain 160 273 IPR005175 -
Csa03g04617 363 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 8 46 332 - -
Csa03g04617 363 MobiDBLite consensus disorder prediction 22 49 - -
Csa03g04617 363 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 46 332 IPR039605 GO:0003680
Csa03g04617 363 CDD DUF296 159 273 IPR005175 -
Csa03g04617 363 SUPERFAMILY AF0104/ALDC/Ptd012-like 157 275 - -
Csa03g04617 363 MobiDBLite consensus disorder prediction 65 83 - -
Csa03g04617 363 MobiDBLite consensus disorder prediction 308 346 - -
Csa03g04617 363 Gene3D - 160 287 - -
Csa03g04617 363 ProSiteProfiles PPC domain profile profile. 155 295 IPR005175 -
Csa03g04617 363 MobiDBLite consensus disorder prediction 142 156 - -
Csa03g04617 363 MobiDBLite consensus disorder prediction 1 162 - -
Csa03g04617 363 MobiDBLite consensus disorder prediction 317 346 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04617 Csa-Chr3:40112092 Csa06g02206 Csa-Chr6:19888856 3.43E-60 dispersed
Csa03g00180 Csa-Chr3:1332208 Csa03g04617 Csa-Chr3:40112092 2.28E-106 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04617 - - csv:101205370 670.618