Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04619 ATGGCTGGTTTGGATTTAGGCAATCGCTATATTCACCAACTTCAAACCCCTAATTTCAACCTCCCCATCGGCCACCATCACCACCACCACCATCCCGACTCTCAATCTCGTCACGATGACGACGATTCCCCCCATCATCCCTTGGAATTTGTCCCCACCACCACCACCGATATGGTTGCCTCTCGTCGTCCACGTGGTCGTCCACCCGGTTCTAAAAACAAGCCAAAGCCACCGGTCATCATAACTCGGGAAAGCGCCAATACCCTAAGGGCTCATATTCTTGAGGTTGGTAGTGGGTGCGACGTCTTCGATTGCATCGCCACTTATGCTCGTCGTCGCCAACGCGGGATCTGCATCTTAAGTGGGAACGGAATGGTAACCAATGTCAACTTACGGCAACCGACTGCAACGGGGTCTGTGTTAACTCTACAAGGGAGGTTTGAGATATTATCCCTTTCTGGATCTTTCTTGCCGCCGCCTGCTCCACCTGGCGCCACTAGTTTGACTATATACTTAGCCGGTGGACAAGGGCAAGTGGTCGGTGGAAACGTTGTGGGAGAATTAGTGGCAGCAGGGCCAGTGACAATCATCGCTGCATCGTTTACAAATGTAGCCTATGAGAGATTGCCACTAGAAGATCAAGAACAAGAACAACAAGAACAAGAACAAGATCAGATGCAACAACCAACCTCGCAGGGTGGTGGCAATAACGTCGGTGGAGGTGGAAGCAATAATCCATTTCCAGATCCATCTTCAGGGCTTCCTTTCTTCAATTTGCCTATAAATATGCAAAACCAAATTCAACTACCATTCTAA 816 49.39 MAGLDLGNRYIHQLQTPNFNLPIGHHHHHHHPDSQSRHDDDDSPHHPLEFVPTTTTDMVASRRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVGSGCDVFDCIATYARRRQRGICILSGNGMVTNVNLRQPTATGSVLTLQGRFEILSLSGSFLPPPAPPGATSLTIYLAGGQGQVVGGNVVGELVAAGPVTIIAASFTNVAYERLPLEDQEQEQQEQEQDQMQQPTSQGGGNNVGGGGSNNPFPDPSSGLPFFNLPINMQNQIQLPF* 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 40121090 40122808 - CsaV3_3G049250.1 Csa03g04619 525524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04619 271 Gene3D - 89 224 - -
Csa03g04619 271 PIRSF ESCAROLA 8 269 IPR014476 GO:0003680
Csa03g04619 271 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 1 270 IPR014476 GO:0003680
Csa03g04619 271 MobiDBLite consensus disorder prediction 221 258 - -
Csa03g04619 271 MobiDBLite consensus disorder prediction 33 47 - -
Csa03g04619 271 MobiDBLite consensus disorder prediction 18 79 - -
Csa03g04619 271 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 1 270 - -
Csa03g04619 271 MobiDBLite consensus disorder prediction 213 258 - -
Csa03g04619 271 ProSiteProfiles PPC domain profile profile. 86 222 IPR005175 -
Csa03g04619 271 Pfam Plants and Prokaryotes Conserved (PCC) domain 90 203 IPR005175 -
Csa03g04619 271 CDD DUF296 90 173 IPR005175 -
Csa03g04619 271 SUPERFAMILY AF0104/ALDC/Ptd012-like 86 215 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04619 Csa-Chr3:40121090 Csa06g00649 Csa-Chr6:5397986 4.07E-92 dispersed
Csa03g00181 Csa-Chr3:1347507 Csa03g04619 Csa-Chr3:40121090 1.23E-96 wgd
Csa03g01009 Csa-Chr3:8151266 Csa03g04619 Csa-Chr3:40121090 9.52E-89 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04619 - - csv:101219835 462.611