Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa03g04619 | ATGGCTGGTTTGGATTTAGGCAATCGCTATATTCACCAACTTCAAACCCCTAATTTCAACCTCCCCATCGGCCACCATCACCACCACCACCATCCCGACTCTCAATCTCGTCACGATGACGACGATTCCCCCCATCATCCCTTGGAATTTGTCCCCACCACCACCACCGATATGGTTGCCTCTCGTCGTCCACGTGGTCGTCCACCCGGTTCTAAAAACAAGCCAAAGCCACCGGTCATCATAACTCGGGAAAGCGCCAATACCCTAAGGGCTCATATTCTTGAGGTTGGTAGTGGGTGCGACGTCTTCGATTGCATCGCCACTTATGCTCGTCGTCGCCAACGCGGGATCTGCATCTTAAGTGGGAACGGAATGGTAACCAATGTCAACTTACGGCAACCGACTGCAACGGGGTCTGTGTTAACTCTACAAGGGAGGTTTGAGATATTATCCCTTTCTGGATCTTTCTTGCCGCCGCCTGCTCCACCTGGCGCCACTAGTTTGACTATATACTTAGCCGGTGGACAAGGGCAAGTGGTCGGTGGAAACGTTGTGGGAGAATTAGTGGCAGCAGGGCCAGTGACAATCATCGCTGCATCGTTTACAAATGTAGCCTATGAGAGATTGCCACTAGAAGATCAAGAACAAGAACAACAAGAACAAGAACAAGATCAGATGCAACAACCAACCTCGCAGGGTGGTGGCAATAACGTCGGTGGAGGTGGAAGCAATAATCCATTTCCAGATCCATCTTCAGGGCTTCCTTTCTTCAATTTGCCTATAAATATGCAAAACCAAATTCAACTACCATTCTAA | 816 | 49.39 | MAGLDLGNRYIHQLQTPNFNLPIGHHHHHHHPDSQSRHDDDDSPHHPLEFVPTTTTDMVASRRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVGSGCDVFDCIATYARRRQRGICILSGNGMVTNVNLRQPTATGSVLTLQGRFEILSLSGSFLPPPAPPGATSLTIYLAGGQGQVVGGNVVGELVAAGPVTIIAASFTNVAYERLPLEDQEQEQQEQEQDQMQQPTSQGGGNNVGGGGSNNPFPDPSSGLPFFNLPINMQNQIQLPF* | 272 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 40121090 | 40122808 | - | CsaV3_3G049250.1 | Csa03g04619 | 525524 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa03g04619 | 271 | Gene3D | - | 89 | 224 | - | - | |
Csa03g04619 | 271 | PIRSF | ESCAROLA | 8 | 269 | IPR014476 | GO:0003680 | |
Csa03g04619 | 271 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 1 | 270 | IPR014476 | GO:0003680 | |
Csa03g04619 | 271 | MobiDBLite | consensus disorder prediction | 221 | 258 | - | - | |
Csa03g04619 | 271 | MobiDBLite | consensus disorder prediction | 33 | 47 | - | - | |
Csa03g04619 | 271 | MobiDBLite | consensus disorder prediction | 18 | 79 | - | - | |
Csa03g04619 | 271 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN | 1 | 270 | - | - | |
Csa03g04619 | 271 | MobiDBLite | consensus disorder prediction | 213 | 258 | - | - | |
Csa03g04619 | 271 | ProSiteProfiles | PPC domain profile profile. | 86 | 222 | IPR005175 | - | |
Csa03g04619 | 271 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 90 | 203 | IPR005175 | - | |
Csa03g04619 | 271 | CDD | DUF296 | 90 | 173 | IPR005175 | - | |
Csa03g04619 | 271 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 86 | 215 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa03g04619 | Csa-Chr3:40121090 | Csa06g00649 | Csa-Chr6:5397986 | 4.07E-92 | dispersed | |
Csa03g00181 | Csa-Chr3:1347507 | Csa03g04619 | Csa-Chr3:40121090 | 1.23E-96 | wgd | |
Csa03g01009 | Csa-Chr3:8151266 | Csa03g04619 | Csa-Chr3:40121090 | 9.52E-89 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa03g04619 | - | - | csv:101219835 | 462.611 |