Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04620 ATGGCTGCTGAGCTTGTGCTTGGATTCCAATACTCTTCTTCTTTGCCTCATCTTTCCGAAACAACTCGAGACGGGCAGAATCCAAACGGTGTAAACCCTATGCAAACCCCTGATGTTGTTGTTGATGACGATGACTCATGGGAAGTCCGAGCTTTCGCCGAGGACACGGCTAATGTTATGGGAACTACTTGGCCTCCTAGGTCTTACACTTGCACTTATTGTAGAAGAGAGTTTAGGTCAGCTCAAGCCCTAGGCGGTCATATGAATGTTCACCGTCGTGACCGTGCTCGCCTCCACCACCAAGCTCCATCGTCGTCATCCAACCCTATGAAACCCTCTTCCACTTCTTCCTCTAATTCCAATTCTTTCATCATCCCAACTCCTGATTTTAATGGCGGAGGAAGCTTGTGCCTTCTTTACCAATTCCCAAACCCTAATAGTATTAATGGTGGAATCAATACCTCTTCTTCCACATTAAATGCTTACATTCACTCACCCTCTTCTCTTTTCTCCATGCCACATCATTCCTTCAACACCTACCCGTCCTCGACTTCAGTGTCCCAGGCTTTCCCGATGAACGACGACAACCACCGTCGTCTCGAAACAAGTACTTACTCAGCCTCCATGGAAAATAATAACGGTAGCCAAGATGAAGTACTTGATCTTGAGCTTAGACTTGGACATGGTCCACCTTCTTCAACTCAAAATCTCATGGAAAAGGGAGAGAAGAAGATCTCTGATTCAGAAGCTGCATGTTTGAAGGAGAGATCATCAGATTGA 780 46.03 MAAELVLGFQYSSSLPHLSETTRDGQNPNGVNPMQTPDVVVDDDDSWEVRAFAEDTANVMGTTWPPRSYTCTYCRREFRSAQALGGHMNVHRRDRARLHHQAPSSSSNPMKPSSTSSSNSNSFIIPTPDFNGGGSLCLLYQFPNPNSINGGINTSSSTLNAYIHSPSSLFSMPHHSFNTYPSSTSVSQAFPMNDDNHRRLETSTYSASMENNNGSQDEVLDLELRLGHGPPSSTQNLMEKGEKKISDSEAACLKERSSD* 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 40137845 40139161 + CsaV3_3G049260.1 Csa03g04620 525525

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04620 259 PANTHER OS07G0101800 PROTEIN 36 228 - -
Csa03g04620 259 MobiDBLite consensus disorder prediction 101 125 - -
Csa03g04620 259 Gene3D Classic Zinc Finger 59 122 - -
Csa03g04620 259 PANTHER OS07G0101800 PROTEIN 36 228 - -
Csa03g04620 259 SMART c2h2final6 69 91 IPR013087 -
Csa03g04620 259 Pfam C2H2-type zinc finger 69 93 - -
Csa03g04620 259 MobiDBLite consensus disorder prediction 240 259 - -
Csa03g04620 259 ProSiteProfiles Zinc finger C2H2 type domain profile. 69 96 IPR013087 -
Csa03g04620 259 MobiDBLite consensus disorder prediction 225 259 - -
Csa03g04620 259 MobiDBLite consensus disorder prediction 16 39 - -
Csa03g04620 259 MobiDBLite consensus disorder prediction 16 34 - -
Csa03g04620 259 SUPERFAMILY beta-beta-alpha zinc fingers 66 96 IPR036236 -
Csa03g04620 259 ProSitePatterns Zinc finger C2H2 type domain signature. 71 91 IPR013087 -
Csa03g04620 259 MobiDBLite consensus disorder prediction 97 125 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04620 - - - csv:101205606 471.855
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02334 Csa-Chr3:20916870 Csa03g04620 Csa-Chr3:40137845 2.07E-11 dispersed
Csa03g04620 Csa-Chr3:40137845 Csa04g01516 Csa-Chr4:14825506 6.73E-27 dispersed
Csa03g01241 Csa-Chr3:9528332 Csa03g04620 Csa-Chr3:40137845 4.19E-19 transposed
Csa03g00183 Csa-Chr3:1374591 Csa03g04620 Csa-Chr3:40137845 4.75E-37 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g661 . . . Bda08g00626 Bpe05g00532 . Bma07g00945 . Cmo06g00876 . Cma02g01606 . Car02g01366 . . . Cpe05g00184 . . . . . . . Cla10g00172 Cam10g0171 Cec10g0180 Cco10g0180 Clacu10g0175 Cmu10g1023 Cre10g0429 . . . . . . . Cme06g02480 . . . Bda09g00708 Bpe08g00846 . Bma05g00715 . . Cmo02g01650 . Cma06g00849 . . . . . . . . . . . . . . . . . . . . Csa03g04620 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013309 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 0 1 1 1 0 27
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31447 PF13912 zf-C2H2_6 3.00E-07 CL0361 Csa TF