Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04650 ATGCCTCTGCTTCTCCTCTTCAACGTTTTCTCATTCTTCACTCTCATCATACACATTTTCTTCTCCCTCATCTCCTCTCATGCTTCCATTTCTTCTTCTTCTTCTACTTCTTTAGTACATAACGCTCAATTTGGCGCAATGGCTGCCATGGAGTCCTTGATCGCCCTTGTTAACCGTATTCAGAGAGCTTGTACTGTTCTTGGTGATTATGGCGGTGACTCTGCTTTGCCTACTCTTTGGGAGGCTCTTCCGTCTGTTGTTGTCGTCGGCGGTCAGAGCTCTGGAAAATCATCGGTGTTGGAGAGCATTGTTGGTCGTGATTTTCTTCCCCGGGGATCAGGAATTGTTACGCGGAGGCCTCTAGTCTTGCAGCTCCAAAAGGTTGAACCAGGAAGAGAGGAGTATGCAGAGTTTCTTCATCTGCCGAAGAAAAAATTTACTGATTTCTCGTTGGTTAGGAAGGAAATAGAAGATGAAACTGATAGCTTGACTGGGAGGTTAAAACAAATTTCTCCTGTTCCAATTCATCTCAGTATCTACTCTCCAAATGTGGTCAATTTGACACTCATAGATTTGCCTGGTTTAACAAAGGTTGCTGTAGAAGGACAGCCTGACAGCATCGTTCAAGATATTGAGACAATGGTCCGTACTTATATCGAGAAGCCAAACTGCATTATTTTGGCCATAACTCCGGCTAATCAAGATATTGCAACATCTGATGCTATCAAGCTTTCTCGAGAGGTTGATCCCACAGGTGAAAGGACCTTTGGGGTGTTGACAAAGCTTGATTTGATGGATAAAGGAACAAATGCTTTGGAGGTTCTTGATGGAAGGTCCTATCGGCTTCAACACCCTTGGGTTGGAGTTGTCAACCGTTCTCAAGCTGATATCAATAAGAATATTGATATGATTACCGCTCGACGAAGGGAGCGTGAATTCTTTGCTTCTAGTATTGACTACAGACACTTGGCTGGTACAATGGGGTCAGAGTATCTGGCAAAACTCCTGTCAAAGCACCTAGAGTCTCAGATAAAGACTCGTATGCCTGGCATTGCATCGTTAATTAACAAAAGCATTGATGAAATTGAAGCAGAGCTTGATCATCTTGGGAAGCCTGTTTCTATAGACTCTGGGGCTCAATTGTATACCATCCTAGAACTTTGCCGTGCATTTGACCTGGTGTTCAAGGAGCATCTCCATGGGGGGCGACCTGGTGGTGACCGGATATATAGCGTTTTTGATAATCAGCTTCCTCATGCTTTGAGAAGGCTTCCTTTTGATCGGTATCTCTCACTGCAAAATGTGAGAAAAGTAATATCGGAGGCCGATGGATACCAACCCCATCTGATTGCACCTGAGCATGGGTATCGGCGCCTTATTGAAGGAGCAGTTAATTATTTTAGACGTCCGGCTGAAGCTTCAGTTGATGCTGTTCATTTCATTTTGAAGGAACTCGTTAGAAGATCAATGGCAGAAACTCAGGAGCTGAAGCGCTTTCCCACTCTCCAAGCTGAAGTTTCGAGAGCTGCAAACGAAGCGTTAGAGAGATTTCGAGAAGATAGCAAAAAGACAACCTTGCGACTGGTTGACATGGAATCCTCCTACCTAACAGTAGACTTCTTTCGAAAGCTCCAACAGGAAGATGAAAAGGGAGGAAACTCACCAGCTACACCTAGCACAGACAGGTACACCGAGGCGCATTTTCACCAGATAGCATCAAATATTTCTTCATATATCAGGATGGTGTCTGAGACACTGAGGAACACTATTCCAAAGGCTGTTGTTCATTGTCAAGTTAGGGAAGCAAAGCGATCTATATTAGATTACTTTTATGTGCAATTGGGACAAATGGAGGGTAATCAACTTGCAGCTCTTCTGGATGAAGATCCTGATTTGATTGAAAGGAGAAAGCAATGTGTCAAAAGGCTTGAACTACATAAATCAGCAAGGGATGAGATTGACTCGGTCTCATGGTTTTGA 1980 43.84 MPLLLLFNVFSFFTLIIHIFFSLISSHASISSSSSTSLVHNAQFGAMAAMESLIALVNRIQRACTVLGDYGGDSALPTLWEALPSVVVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLQKVEPGREEYAEFLHLPKKKFTDFSLVRKEIEDETDSLTGRLKQISPVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIETMVRTYIEKPNCIILAITPANQDIATSDAIKLSREVDPTGERTFGVLTKLDLMDKGTNALEVLDGRSYRLQHPWVGVVNRSQADINKNIDMITARRREREFFASSIDYRHLAGTMGSEYLAKLLSKHLESQIKTRMPGIASLINKSIDEIEAELDHLGKPVSIDSGAQLYTILELCRAFDLVFKEHLHGGRPGGDRIYSVFDNQLPHALRRLPFDRYLSLQNVRKVISEADGYQPHLIAPEHGYRRLIEGAVNYFRRPAEASVDAVHFILKELVRRSMAETQELKRFPTLQAEVSRAANEALERFREDSKKTTLRLVDMESSYLTVDFFRKLQQEDEKGGNSPATPSTDRYTEAHFHQIASNISSYIRMVSETLRNTIPKAVVHCQVREAKRSILDYFYVQLGQMEGNQLAALLDEDPDLIERRKQCVKRLELHKSARDEIDSVSWF* 660
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 40390066 40399730 - CsaV3_3G049560.1 Csa03g04650 525555

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04650 659 PANTHER DYNAMIN-LIKE PROTEIN 1E 49 658 - -
Csa03g04650 659 ProSitePatterns Dynamin-type guanine nucleotide-binding (G) domain signature. 109 118 IPR019762 -
Csa03g04650 659 SMART dynamin_3 50 300 IPR001401 GO:0003924|GO:0005525
Csa03g04650 659 Pfam Dynamin family 86 261 IPR045063 -
Csa03g04650 659 PANTHER DYNAMIN 49 658 IPR022812 -
Csa03g04650 659 ProSiteProfiles GED domain profile. 568 659 IPR020850 -
Csa03g04650 659 CDD DLP_1 83 349 IPR001401 GO:0003924|GO:0005525
Csa03g04650 659 Gene3D - 50 386 IPR027417 -
Csa03g04650 659 Pfam Dynamin GTPase effector domain 564 656 IPR003130 GO:0003924|GO:0005525
Csa03g04650 659 Gene3D Dynamin, middle domain 387 636 - -
Csa03g04650 659 Pfam Dynamin central region 270 545 IPR000375 -
Csa03g04650 659 SMART GED_2 563 656 IPR003130 GO:0003924|GO:0005525
Csa03g04650 659 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 80 349 IPR030381 GO:0005525
Csa03g04650 659 PRINTS Dynamin signature 83 101 IPR022812 -
Csa03g04650 659 PRINTS Dynamin signature 108 125 IPR022812 -
Csa03g04650 659 PRINTS Dynamin signature 181 198 IPR022812 -
Csa03g04650 659 PRINTS Dynamin signature 231 249 IPR022812 -
Csa03g04650 659 PRINTS Dynamin signature 250 266 IPR022812 -
Csa03g04650 659 PRINTS Dynamin signature 273 292 IPR022812 -
Csa03g04650 659 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 78 357 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04650 - - - csv:101208260 1235.32
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04650 Csa-Chr3:40390066 Csa05g02002 Csa-Chr5:23302089 0 dispersed
Csa01g02288 Csa-Chr1:20019522 Csa03g04650 Csa-Chr3:40390066 3.96E-37 transposed
Csa02g00824 Csa-Chr2:7416088 Csa03g04650 Csa-Chr3:40390066 9.93E-37 transposed
Csa04g02340 Csa-Chr4:23860859 Csa03g04650 Csa-Chr3:40390066 1.60E-19 transposed
Csa07g00505 Csa-Chr7:3631639 Csa03g04650 Csa-Chr3:40390066 2.21E-12 transposed
Csa03g01036 Csa-Chr3:8335002 Csa03g04650 Csa-Chr3:40390066 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g621 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag0438 . . . . Chy04g00050 . . . . . . . Bma05g00717 . . . Cmo19g00502 . . . . . . Bhi05g00520 . . . . . . Cla09g01176 Cam09g1241 Cec09g1257 Cco09g1287 . . Cre09g1205 . Csa03g04650 . Cme04g00064
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000261 5 7 3 6 5 5 6 5 5 5 4 4 4 6 5 6 4 8 5 5 5 5 5 5 5 4 4 8 5 5 154