Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04668 ATGGTTGATTATAGTTTACCAGTATCGAAGAGAACGAGGTTGAGACGAGCTATGAGTGGAATGGAGCATTTGGAGCAGAGGAGGAAGAGGAGGAGGAAAAGCAGATCGGATTCCAGCAGTGATAATGTTCGAGGTAAAGCTTTGCGTGGTAAGAGGGTTTATGATTGGGAACATTCTAGTGTTAATCGAACACTGAAGAAGGATTGTGATGATTGTGATGATTGTGATGATAGTGATGGGGATAGCTTAGAAGTAATTGATGCTCTAACATTTGGTAAAGAAGGTGGGGATTCGGTTACATTTGTAGGTTCTGAGAGTTCGGGGTTGAAGAATGTTAAAGAATTTTATTCGAAGGGGAATGCTGATTTTATTGATTTGGAGGATGATGTTATTTTGTTAGATGAGGATGAGGGATTTGAATCTGTGAACTCTATGTGTTCATTTTCAAAGGGAAAAGAGGGTGAAGAGATATCTCCAGATAAGAGTGTGGGGGGAAGTGATTGTTTGAACTGTAATGGTTGTGAGAGTGGTGGTTGCTCATCCAAGACTGAGCCAACGTGTTCTTCGGATGATGCTGTAGATGAGTCCACTGAATTCGTATCCTCAAGTGAAGAGGAGTTTGACGACTCTAGTGATAGAAATTACGAATTAGAAGAATCGGACGGGTTAAATTCAGAGTCCTCTAGTTCAGAAGATGAGAAGTATCATGGAAGTTACTATGGAGAAATAGGAGAGACATGGGAGAGAAAGGAGAGAACGAAAAAAGAAAATTTGCTTGAAGGTGGACTAAGAAGGAAAGCTTTTGGCTTAGATATATTTGTTGATTTTGACGAGGATGGACATAAGAAAAATGATGAGATTGGTGAACAGGTTAACTGTATTGCACGAAGAACACGTTCACAGTTTGGTTTTAGGACTAGGAAAATAAATACCAATCTTGGAACTGTCAGTCAGCCATTCAATGTTGATGAGGAAGACTCGGATGTTCAGTGTGATGAGAAAGAAGTAGGTTCTTCATCAAGGCATGACAGTGATAGTACTACTGGTGATTCTTGTGATAGTGGTAGTACTACTGGTGATGAAATTTACAAGCCATGGGGCTGGAATAGTAGTAAAAAGAAAACTCAGTTCAACAATCAAAGTAATGATGATGATTTCTTATCTGAACAAAAAGATGATAGCTTCTTATCTGAGAAAAAAGATGATGATACTAACAAGGTTGGGAGTTTTCATGTGGGGAGTAAACTTCAGAACAGTAGAAGCTCACCTGAAACAAATAAACACAATCGGAGCATAGATTTTCAGAAGGTTTGTCCAGAGAATGGCCATGAATTTCGTGATATTGTTAGAACAAAAGGCCGTGGTAGGCCGAGAGGTATTGATGTTTTCAATATTCTTATAGAATCCATAATTGCGGACAAAGAACTGCCTTCAGTTGAGTTAGATCATCCTACAAGTCAACTCTCCCAAATGCCTCTTCCTTTGAAGTTTGGATTGATGGAATCACGTCTTCCAGAGAAGTCAGAAGAAGAAAAAGAATTGGACAAACTCTGGGCGGAACTTGACTTTGCTATCAGATCCAGCGAGATTGGGCTGGTGGATTGTAATACAGTTGAACATGAAGATGCATTTCCTTCAAAGCTTGAGCAAGTGGATCTGTGTCTTCGCGGTGATCATCAGCTCATACTTGATGAACAAATTGGACTTAAATGCAGATGCTGTTCATATGTCAAATTGGAAATCAGGAATATTGCACCTTCTTTTGATACAAATCCACATGGAAAGTCAAAGAAGAAGAAATCTGACTTATTTGAGCATGTTAAATACGATGGCCTTGAACAGGATGCTGATTGTGACGCCCATGACAATCCTGATTCACGATCTCATTTTGGACAAACAGTGTGGGATATCATTCCTGGCATAAGGAATAGCATGTACCCACACCAGCGGGAAGGCTTTGAATTTATTTGGAAAAATATAGCCGGGGGGATTTATCTTGATGAGTTAAGAGAAATGGACGGCTTAAACAATGGGAGTGGATGCATTGTATCACATGCTCCTGGAACAGGAAAAACTCGTCTGACAATTAATTTTCTTCAGACATACATGAAATTAAATCCTACATGTCGGCCTATGATTATTGCACCTAGCAGCATGCTCCTTACCTGGGAAGAGGAGTTTTTGAAGTGGGATGTTGGCATTCCCTTTCATAACCTGAATAAGCGAGATTTCTCTTTCGAGGAGAATATGTCAGCCCTTAAGTTTTTGATGCAAGCTTCTCCATCAGGTCAAAATGTGGACAATGTACGGGTTGTAAAACTATTTTCCTGGAAAAAGGAAAAAAGCATCTTGGGAATTAGTTACAGATTGTTTGAAAGATTAGCTGGAGTTCGGAATGACTCTAAATGTGATAAAGTAAGGAATGTCCTATTGGAGCTCCCTGATCTTGTGGTCTTTGATGAAGGGCACATTCCACGCAACGATGATAGTCTTATTTGGATGGCTTTGTCCAAAATTAAGACAGAAAGGCGCATCATTCTCTCTGGAACTCCTTTCCAGAATAATTTTACTGAATTTTCTAATACACTTAGGCTGGTGAGGCCAAATTTTGCAAAAGAAAGTAATACTGTAGGTGATGGATGCATGGATAAGAAGCGTGGGCGACCAAAAAATATTACAAGAGGAAAATGGGACCTTTTGATTAGTTCCATTGGCAGAACTTCTGAGCTGGAAAGTGCGGAATTGAAAGAAATCAGGGCCTTGATCAATCCATTTGTGCATGTGTATAGGGGCAGCATACTACAAGAGAAACTCCCAGGGTTGAGGAAATCTACGGTTATATTATGGCCAGCAGAGCTGCAGAAGAATTTTCTTGAGAGAGTTCAAGCAAGGAAGAATTCTTTTGAAGTGGAATATGTTGAGTCCTTGATCTCTGTACATCCGTCCCTGATACTGAAAAGTGATAAAGGTGATTGTGAATTTGACAAGGACATGTTAGAGAGGTGTAGATTGAATCCTGAACTAGGAGTGAAACTACAGTTTCTCCTGGAAATTATACGTCTGAGTGAAGCTTTGAATGAAAAGGTTTTAGTTTTCAGCCAATATATTGAACCATTGTCCTTTATAGAAGAACATCTTAAGTTTCATTTTAAATGGACTGAAGGGATAGAGTTGTTTCATATGGATGGAAAACGTGAGATAAAGAAACGACAAGCATTAATAAATACCTTTAACGATCTAACAAGTGAAGTTAGGGTATTGCTTGCATCTACAAGGGCTTGCTCAGAAGGTATAAACCTTGTTGGGGCTTCAAGGGTAGTTTTACTTGATGTTGTATGGAATCCCTCGGTGGAAAGGCAAGCCATATGTCGGGCATATAGACTTGGTCAGAGAAAGGTTGTTTATGTCTACCATCTCATTACCTCTGGAACAAGGGAAGAAGAAAAGTATAGCCGACAAATAGTAAAAGATCGATTGTCTCAGTTAGTTTTTTCGTCTGAACAAAACAGTAATGACGTCAAAGTATCTTCCAGAGATCTGGATGACAGAATTTTGGAAGCTGTACTTCAACACGAAAAGTTTAAAAAGATATTCCAAAAGATAATATACCAATCGAAGGACTCCTGCATGAACGAGAATTTTGGCTTGGCAGACAAGGAGTGA 3663 39.42 MVDYSLPVSKRTRLRRAMSGMEHLEQRRKRRRKSRSDSSSDNVRGKALRGKRVYDWEHSSVNRTLKKDCDDCDDCDDSDGDSLEVIDALTFGKEGGDSVTFVGSESSGLKNVKEFYSKGNADFIDLEDDVILLDEDEGFESVNSMCSFSKGKEGEEISPDKSVGGSDCLNCNGCESGGCSSKTEPTCSSDDAVDESTEFVSSSEEEFDDSSDRNYELEESDGLNSESSSSEDEKYHGSYYGEIGETWERKERTKKENLLEGGLRRKAFGLDIFVDFDEDGHKKNDEIGEQVNCIARRTRSQFGFRTRKINTNLGTVSQPFNVDEEDSDVQCDEKEVGSSSRHDSDSTTGDSCDSGSTTGDEIYKPWGWNSSKKKTQFNNQSNDDDFLSEQKDDSFLSEKKDDDTNKVGSFHVGSKLQNSRSSPETNKHNRSIDFQKVCPENGHEFRDIVRTKGRGRPRGIDVFNILIESIIADKELPSVELDHPTSQLSQMPLPLKFGLMESRLPEKSEEEKELDKLWAELDFAIRSSEIGLVDCNTVEHEDAFPSKLEQVDLCLRGDHQLILDEQIGLKCRCCSYVKLEIRNIAPSFDTNPHGKSKKKKSDLFEHVKYDGLEQDADCDAHDNPDSRSHFGQTVWDIIPGIRNSMYPHQREGFEFIWKNIAGGIYLDELREMDGLNNGSGCIVSHAPGTGKTRLTINFLQTYMKLNPTCRPMIIAPSSMLLTWEEEFLKWDVGIPFHNLNKRDFSFEENMSALKFLMQASPSGQNVDNVRVVKLFSWKKEKSILGISYRLFERLAGVRNDSKCDKVRNVLLELPDLVVFDEGHIPRNDDSLIWMALSKIKTERRIILSGTPFQNNFTEFSNTLRLVRPNFAKESNTVGDGCMDKKRGRPKNITRGKWDLLISSIGRTSELESAELKEIRALINPFVHVYRGSILQEKLPGLRKSTVILWPAELQKNFLERVQARKNSFEVEYVESLISVHPSLILKSDKGDCEFDKDMLERCRLNPELGVKLQFLLEIIRLSEALNEKVLVFSQYIEPLSFIEEHLKFHFKWTEGIELFHMDGKREIKKRQALINTFNDLTSEVRVLLASTRACSEGINLVGASRVVLLDVVWNPSVERQAICRAYRLGQRKVVYVYHLITSGTREEEKYSRQIVKDRLSQLVFSSEQNSNDVKVSSRDLDDRILEAVLQHEKFKKIFQKIIYQSKDSCMNENFGLADKE* 1221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 40605454 40612381 + CsaV3_3G049740.1 Csa03g04668 525573

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04668 1220 MobiDBLite consensus disorder prediction 385 408 - -
Csa03g04668 1220 Pfam SNF2-related domain 676 966 IPR000330 GO:0005524|GO:0140658
Csa03g04668 1220 MobiDBLite consensus disorder prediction 177 196 - -
Csa03g04668 1220 CDD SF2_C_SNF 1008 1140 - -
Csa03g04668 1220 Gene3D - 945 1213 IPR027417 -
Csa03g04668 1220 Gene3D - 614 899 IPR038718 -
Csa03g04668 1220 MobiDBLite consensus disorder prediction 1 48 - -
Csa03g04668 1220 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 4 1215 - -
Csa03g04668 1220 SMART helicmild6 1040 1129 IPR001650 -
Csa03g04668 1220 MobiDBLite consensus disorder prediction 197 215 - -
Csa03g04668 1220 MobiDBLite consensus disorder prediction 342 358 - -
Csa03g04668 1220 MobiDBLite consensus disorder prediction 317 430 - -
Csa03g04668 1220 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 601 876 IPR027417 -
Csa03g04668 1220 MobiDBLite consensus disorder prediction 410 425 - -
Csa03g04668 1220 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1017 1174 IPR001650 -
Csa03g04668 1220 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 672 869 IPR014001 -
Csa03g04668 1220 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 815 1168 IPR027417 -
Csa03g04668 1220 MobiDBLite consensus disorder prediction 177 237 - -
Csa03g04668 1220 MobiDBLite consensus disorder prediction 369 384 - -
Csa03g04668 1220 SMART ultradead3 641 895 IPR014001 -
Csa03g04668 1220 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 4 1215 IPR044567 GO:0080188
Csa03g04668 1220 Pfam Helicase conserved C-terminal domain 1011 1129 IPR001650 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04668 K10875 RAD54L, RAD54; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-] - csv:105435045 2337.38
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01291 Csa-Chr2:12561316 Csa03g04668 Csa-Chr3:40605454 1.14E-83 dispersed
Csa03g04668 Csa-Chr3:40605454 Csa05g00859 Csa-Chr5:6559203 1.24E-103 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g573 . . . . . . . . . . Cma02g01579 . Car02g01343 . . . Cpe05g00211 . . . . . . . . . . . . . . Cone8ag0437 Cone12ag0422 . . . . Chy04g00035 . . . Bda07g00129 Bda09g00688 Bpe08g00872 Bpe11g00360 . . Sed01g4061 Cmo02g01621 Cmo19g00395 . . . . . . Bhi05g00566 Tan07g1908 Cmetu04g1824 Lac11g2350 Hepe06g1725 . . Cla09g01200 Cam09g1268 Cec09g1282 Cco09g1316 . . Cre09g1228 . Csa03g04668 . Cme04g00044
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005251 3 2 0 2 2 1 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 3 1 1 1 2 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31452 PF00176 SNF2_N 1.40E-19 CL0023 Csa TR