Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04675 ATGGAGGGTTCAACTAAATGTGGGTTTTTGGGGTACCTATTCTTATTGCTTGTGCTCTTGCCTGTGATGTGCTATTCTCAAGACAATTTTGTTTACTCTAGAGCCACCTATTATGGCAGCCCTGATTGCTATGGAACACCATCTGGGGCTTGTGGATTTGGTGAATTTGGAAGGACAGTGAATGATGGCAACGTTGCTGCAGTTTCATATCTTTATAGGAATGGTTCTGGTTGTGGTGCATGTTATCAGGTTAGGTGCACAAATCCAAAATATTGTAGTGGAAGTGGAGCAATTGTGGTGGTGACAGACCATGGTGAAGGGGATTACACTGACTTTATATTAAGCCCAAGAGCCTATGCAAAAATGGCTCATCCAAACACAGCCTTGCAGTTATTTTCATATGGTGTTGTTGATGTTGAATTCAGAAGGGTTTCTTGCCAATACCCATATTACAGTACTCTCAAATTTAAGGTTCATGAACATAGCAGATTCCCTGATTATTTGGCCATTCTTATCATTTATGTTGCTGGCAAAAATGACATCACTGCTGTTGAACTGTGGCAGGAGGACTGCAAAGAATGGAAAGGAATGAGGAGATCCCATGGAGCTGTTTGGGATATGGCAAATCCTCCTAAAGATAACATAAAACTGAGGTTTCAAGTGAGTGGAAGTATGGGATATGGAAATTGGGTTGTGGCAAACAATGCTCTCCCAAATTATTGGAAGCCAGGAGTTGCTTATGACACTGATATTAACCTCTATTAA 765 41.05 MEGSTKCGFLGYLFLLLVLLPVMCYSQDNFVYSRATYYGSPDCYGTPSGACGFGEFGRTVNDGNVAAVSYLYRNGSGCGACYQVRCTNPKYCSGSGAIVVVTDHGEGDYTDFILSPRAYAKMAHPNTALQLFSYGVVDVEFRRVSCQYPYYSTLKFKVHEHSRFPDYLAILIIYVAGKNDITAVELWQEDCKEWKGMRRSHGAVWDMANPPKDNIKLRFQVSGSMGYGNWVVANNALPNYWKPGVAYDTDINLY* 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 40664396 40666530 + CsaV3_3G049810.1 Csa03g04675 525580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04675 254 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 48 151 IPR007112 -
Csa03g04675 254 PANTHER EXPANSIN-LIKE B1 12 253 - -
Csa03g04675 254 Pfam Lytic transglycolase 68 140 IPR009009 -
Csa03g04675 254 Gene3D - 151 254 IPR036749 -
Csa03g04675 254 PANTHER EXPANSIN-B3 12 253 - -
Csa03g04675 254 SUPERFAMILY PHL pollen allergen 154 248 IPR036749 -
Csa03g04675 254 Gene3D - 22 147 IPR036908 -
Csa03g04675 254 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 166 249 IPR007117 -
Csa03g04675 254 SUPERFAMILY Barwin-like endoglucanases 15 149 IPR036908 -
Csa03g04675 254 PRINTS Expansin/Lol pI family signature 29 44 IPR007118 GO:0005576
Csa03g04675 254 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576
Csa03g04675 254 PRINTS Expansin/Lol pI family signature 134 150 IPR007118 GO:0005576
Csa03g04675 254 PRINTS Expansin/Lol pI family signature 194 208 IPR007118 GO:0005576
Csa03g04675 254 PRINTS Expansin/Lol pI family signature 235 249 IPR007118 GO:0005576
Csa03g04675 254 Pfam Expansin C-terminal domain 155 238 IPR007117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04649 Csa-Chr3:40386206 Csa03g04675 Csa-Chr3:40664396 7.61E-67 dispersed
Csa03g04675 Csa-Chr3:40664396 Csa07g00152 Csa-Chr7:1303954 8.20E-48 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04675 - - csv:101215548 525.783