Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04676 ATGGGAAAGCATGGACCTTGCTGTCACTGTGGAGTTACAAGCACTCCTCTTTGGCGTAATGGACCTCCCGATAAACCGGTATTATGCAATGCATGTGGATCCCGATGGAGAACAAAAGGAACACTTGCAAACTATACCCCTTTGCACGCTCGGGCTGATCCCGATGAATATGAAGACCACAGGGTTTCCAGGATGAAGAGCATTTCAATAAACAAAAACAAAGAAGTTAAACTGCTAAAAAGAAAGCTGCAACAAGCAGATGGGTCAATTGGGTGGATGATTCCCGACCAAGGTCAGGGTTATCATAGAGTAGTGGATGAAGATACAAGCAATAGATCCAGTTCGGGATCGGCCATATCTAATCCTGAGAGTTGTGCCCATTTCAGCAGTGCGGATGCTAGTGATTTGACAGGTCCAGCTCAGTCAATAGTGTGGGAGTCCATGGTGCCTTCCAGGAAGCGGACCTGTGTGAATCGTCCAAAGCAGTCCCCGGTTGAAAAACTAACTAAAGATCTATATAGTATCTTACGTGAGCAGAGATCTTCCTATTTCTCCGAAGCTTCTGAGGATGATTTGCTTTTTGAGAGTGAAAAACCTATGGTCTCTGTTGAGATAGGTCATGGAAGTATTCTCATTAGGCATCCAAGTTCTATAGCTCGAGAAGAGGAATCTGAAGCTAGCTCAATTTCAGTTGATAACAAGCAATGCTTGGTAAATGAGGTCTATTCACCCCATTCTACAACTGTTCGTGTATGTAGTGAAAACAAGGGTATAAATTTCCCAACGTCTAGGATTGGAAAGATGAAGAATCCTTATGGATCGGGAGTACAACAAGAACAAATTAAAAGGAATGACTCTCATCACGAATGCTTACAAATTCTTGGAAACCATAACTCGCCCTTGTGTGATGTAGATATAAATGACATTATAAACTTCGAAGAGTTCGCAAGACAACTAACAAATGAAGAACAACAGCAATTAATGAAGTACCTACCACAGATTGATATCGCTGAATTTCCCGAGACCCTCAAGAGCATGTTTGATAGCCCCTATTTCAAGGAGAACTTAACTTCCTTCCAACAACTACTTAGCGAGGGCGTTTTCGATGTTTCCTTCCTTGAAACAAAGGTTGAAGACTGCAAAACCTTGAAAAGGCTTGTCTTGTATAATTCTTCAAAATCCAAATGGGTTGAACGCTATCATCAACTGAAGAAATGTAAAAATGGTAGTAAAGGACCTTTTCTTTCCCATGCCAATGCGTCGGTGTCGAGTAACTTCACGAATGTTAAGCAATTGTGTGAGAGCTACAATCAAAATATTCCAGAGGCAAAGACCATCTTGAAGAGTCCCAAAAGGTTGGTGATGAAGGAAAATAAGGATCCTGGAGAGAATGATGGATCATGCTTCAGTCCTAGAAGTTTATTTGCTTTGCCTCCTGATGGAAGCTCCCTCATGCTTGAATCCTTACATTTCGTCGAAGAAAGTTCAGATCAAGATCTATTGCTTGATGTACGGTCAAATAGTTCATTCCCGCAAGCTGAGCTCCTTCACCCAACCTCTCGTTCGGGTGGTAGGCAGGCCAGCACATGTAGTAGCTCAGTTCACCCACATCTTGTTCATCACTAA 1626 42.37 MGKHGPCCHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGTLANYTPLHARADPDEYEDHRVSRMKSISINKNKEVKLLKRKLQQADGSIGWMIPDQGQGYHRVVDEDTSNRSSSGSAISNPESCAHFSSADASDLTGPAQSIVWESMVPSRKRTCVNRPKQSPVEKLTKDLYSILREQRSSYFSEASEDDLLFESEKPMVSVEIGHGSILIRHPSSIAREEESEASSISVDNKQCLVNEVYSPHSTTVRVCSENKGINFPTSRIGKMKNPYGSGVQQEQIKRNDSHHECLQILGNHNSPLCDVDINDIINFEEFARQLTNEEQQQLMKYLPQIDIAEFPETLKSMFDSPYFKENLTSFQQLLSEGVFDVSFLETKVEDCKTLKRLVLYNSSKSKWVERYHQLKKCKNGSKGPFLSHANASVSSNFTNVKQLCESYNQNIPEAKTILKSPKRLVMKENKDPGENDGSCFSPRSLFALPPDGSSLMLESLHFVEESSDQDLLLDVRSNSSFPQAELLHPTSRSGGRQASTCSSSVHPHLVHH* 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 40672546 40678875 - CsaV3_3G049820.1 Csa03g04676 525581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04676 541 PANTHER GATA TRANSCRIPTION FACTOR 26 1 541 - -
Csa03g04676 541 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 45 - -
Csa03g04676 541 CDD ZnF_GATA 6 51 IPR000679 GO:0006355|GO:0043565
Csa03g04676 541 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Csa03g04676 541 MobiDBLite consensus disorder prediction 516 541 - -
Csa03g04676 541 Pfam Asx homology domain 285 374 IPR028020 -
Csa03g04676 541 SMART GATA_3 1 55 IPR000679 GO:0006355|GO:0043565
Csa03g04676 541 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 297 409 IPR044867 -
Csa03g04676 541 Gene3D - 4 84 IPR013088 GO:0006355|GO:0008270
Csa03g04676 541 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Csa03g04676 541 MobiDBLite consensus disorder prediction 516 535 - -
Csa03g04676 541 PANTHER OSJNBB0038F03.10 PROTEIN 1 541 IPR044589 -
Csa03g04676 541 Gene3D - 294 385 IPR038108 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04676 Csa-Chr3:40672546 Csa04g00528 Csa-Chr4:3481016 1.59E-07 dispersed
Csa03g00234 Csa-Chr3:1867421 Csa03g04676 Csa-Chr3:40672546 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31453 PF13919 ASXH 8.80E-09 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04676 - - csv:101215311 1063.52