Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g04676 ATGGGAAAGCATGGACCTTGCTGTCACTGTGGAGTTACAAGCACTCCTCTTTGGCGTAATGGACCTCCCGATAAACCGGTATTATGCAATGCATGTGGATCCCGATGGAGAACAAAAGGAACACTTGCAAACTATACCCCTTTGCACGCTCGGGCTGATCCCGATGAATATGAAGACCACAGGGTTTCCAGGATGAAGAGCATTTCAATAAACAAAAACAAAGAAGTTAAACTGCTAAAAAGAAAGCTGCAACAAGCAGATGGGTCAATTGGGTGGATGATTCCCGACCAAGGTCAGGGTTATCATAGAGTAGTGGATGAAGATACAAGCAATAGATCCAGTTCGGGATCGGCCATATCTAATCCTGAGAGTTGTGCCCATTTCAGCAGTGCGGATGCTAGTGATTTGACAGGTCCAGCTCAGTCAATAGTGTGGGAGTCCATGGTGCCTTCCAGGAAGCGGACCTGTGTGAATCGTCCAAAGCAGTCCCCGGTTGAAAAACTAACTAAAGATCTATATAGTATCTTACGTGAGCAGAGATCTTCCTATTTCTCCGAAGCTTCTGAGGATGATTTGCTTTTTGAGAGTGAAAAACCTATGGTCTCTGTTGAGATAGGTCATGGAAGTATTCTCATTAGGCATCCAAGTTCTATAGCTCGAGAAGAGGAATCTGAAGCTAGCTCAATTTCAGTTGATAACAAGCAATGCTTGGTAAATGAGGTCTATTCACCCCATTCTACAACTGTTCGTGTATGTAGTGAAAACAAGGGTATAAATTTCCCAACGTCTAGGATTGGAAAGATGAAGAATCCTTATGGATCGGGAGTACAACAAGAACAAATTAAAAGGAATGACTCTCATCACGAATGCTTACAAATTCTTGGAAACCATAACTCGCCCTTGTGTGATGTAGATATAAATGACATTATAAACTTCGAAGAGTTCGCAAGACAACTAACAAATGAAGAACAACAGCAATTAATGAAGTACCTACCACAGATTGATATCGCTGAATTTCCCGAGACCCTCAAGAGCATGTTTGATAGCCCCTATTTCAAGGAGAACTTAACTTCCTTCCAACAACTACTTAGCGAGGGCGTTTTCGATGTTTCCTTCCTTGAAACAAAGGTTGAAGACTGCAAAACCTTGAAAAGGCTTGTCTTGTATAATTCTTCAAAATCCAAATGGGTTGAACGCTATCATCAACTGAAGAAATGTAAAAATGGTAGTAAAGGACCTTTTCTTTCCCATGCCAATGCGTCGGTGTCGAGTAACTTCACGAATGTTAAGCAATTGTGTGAGAGCTACAATCAAAATATTCCAGAGGCAAAGACCATCTTGAAGAGTCCCAAAAGGTTGGTGATGAAGGAAAATAAGGATCCTGGAGAGAATGATGGATCATGCTTCAGTCCTAGAAGTTTATTTGCTTTGCCTCCTGATGGAAGCTCCCTCATGCTTGAATCCTTACATTTCGTCGAAGAAAGTTCAGATCAAGATCTATTGCTTGATGTACGGTCAAATAGTTCATTCCCGCAAGCTGAGCTCCTTCACCCAACCTCTCGTTCGGGTGGTAGGCAGGCCAGCACATGTAGTAGCTCAGTTCACCCACATCTTGTTCATCACTAA 1626 42.37 MGKHGPCCHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGTLANYTPLHARADPDEYEDHRVSRMKSISINKNKEVKLLKRKLQQADGSIGWMIPDQGQGYHRVVDEDTSNRSSSGSAISNPESCAHFSSADASDLTGPAQSIVWESMVPSRKRTCVNRPKQSPVEKLTKDLYSILREQRSSYFSEASEDDLLFESEKPMVSVEIGHGSILIRHPSSIAREEESEASSISVDNKQCLVNEVYSPHSTTVRVCSENKGINFPTSRIGKMKNPYGSGVQQEQIKRNDSHHECLQILGNHNSPLCDVDINDIINFEEFARQLTNEEQQQLMKYLPQIDIAEFPETLKSMFDSPYFKENLTSFQQLLSEGVFDVSFLETKVEDCKTLKRLVLYNSSKSKWVERYHQLKKCKNGSKGPFLSHANASVSSNFTNVKQLCESYNQNIPEAKTILKSPKRLVMKENKDPGENDGSCFSPRSLFALPPDGSSLMLESLHFVEESSDQDLLLDVRSNSSFPQAELLHPTSRSGGRQASTCSSSVHPHLVHH* 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 40672546 40678875 - CsaV3_3G049820.1 Csa03g04676 525581

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g04676 541 PANTHER GATA TRANSCRIPTION FACTOR 26 1 541 - -
Csa03g04676 541 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 45 - -
Csa03g04676 541 CDD ZnF_GATA 6 51 IPR000679 GO:0006355|GO:0043565
Csa03g04676 541 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Csa03g04676 541 MobiDBLite consensus disorder prediction 516 541 - -
Csa03g04676 541 Pfam Asx homology domain 285 374 IPR028020 -
Csa03g04676 541 SMART GATA_3 1 55 IPR000679 GO:0006355|GO:0043565
Csa03g04676 541 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 297 409 IPR044867 -
Csa03g04676 541 Gene3D - 4 84 IPR013088 GO:0006355|GO:0008270
Csa03g04676 541 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Csa03g04676 541 MobiDBLite consensus disorder prediction 516 535 - -
Csa03g04676 541 PANTHER OSJNBB0038F03.10 PROTEIN 1 541 IPR044589 -
Csa03g04676 541 Gene3D - 294 385 IPR038108 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g04676 - - - csv:101215311 1063.52
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04676 Csa-Chr3:40672546 Csa04g00528 Csa-Chr4:3481016 1.59E-07 dispersed
Csa03g00234 Csa-Chr3:1867421 Csa03g04676 Csa-Chr3:40672546 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa02g02256 CCT,ECH 1 224 C2C2-Gata Transcription Factor Family AT5G25830 56.3 1.2e-59 227.3
Csa06g03299 . 86 257 C2C2-Gata Transcription Factor Family AT4G34680 50.3 6.6e-37 151.4
Csa02g02256 CCT,ECH 35 189 C2C2-Gata Transcription Factor Family AT3G60530 53.4 7.7e-37 151.0
Csa04g00528 . 17 300 C2C2-Gata Transcription Factor Family AT5G66320 51.7 1.3e-66 250.4
Csa04g00528 . 23 296 C2C2-Gata Transcription Factor Family AT3G51080 50.5 1.4e-54 210.3
Csa06g03299 . 95 256 C2C2-Gata Transcription Factor Family AT4G36240 53.5 1.7e-41 166.4
Csa02g02256 CCT,ECH 3 224 C2C2-Gata Transcription Factor Family AT4G32890 52.4 7.3e-48 188.0
Csa03g04676 . 1 517 C2C2-Gata Transcription Factor Family AT4G17570 52.5 2.0e-135 479.6
Csa03g00234 . 3 446 C2C2-Gata Transcription Factor Family AT4G17570 50.3 1.5e-101 367.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001256 2 2 1 2 3 2 5 2 2 2 2 2 4 2 1 4 2 3 4 2 2 2 2 2 2 2 2 7 3 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31453 PF13919 ASXH 8.80E-09 No_clan Csa TF