Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00001 ATGAGGAAGAGCAGAGGTAGGCAAAAGGTGGAGATGGTGAAGATGCCAAATGAGAGCAACCTTCAGGTCACCTTCTCCAAGCGTCGCTCCGGCCTCTTCAAGAAAGCTAGCGAGCTCTGCACCCTCTGTGGTGCCGAGATTGCCATCATTGTCTTCTCACCTGGGAAGAAGGTCTTTTCCTTTGGCCACCCTTGCGTCGAGGCTCTCATCGAGCGCTTTGTCACACGAAACCCTCCACCCAGTTCTGGTACGCTGCAGCTTATCGAAGCTCACCGGAATGCTAATGTTCGAGAACTTAATGCTCAACTTACTCAAGTTCTCAACCAACTAGAAATGGAGCGGAAGCGTGGGGAAGAGTTGAACAAACTACGCAAGGCAAGCCAGGCACAATGTTGGTGGGAGCTTCCCATAGAAGAAATGGAAATGCATCAACTAGAACAACTTAAAGCTTCGTTGGATGAGCTAAAGAAGAATGTGACTCAACAAGCAGATCGGATTTTGATTCAGACTTCTTCTAATGCCAATCCCCCGACGCAGTTGATCTTCCCGACTCAGATTCCGACTCAAACATCAACAACAACAAATGGCCCCAACCAGCAACCCGGGCTTTTCGTCGTGGATCCTAAGAACATCATCTCCCATCTTCCCTTCAACTATGGTTCCTATGGATCAAGAGGTTTCTTTTGA 687 48.62 MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFSFGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNQLEMERKRGEELNKLRKASQAQCWWELPIEEMEMHQLEQLKASLDELKKNVTQQADRILIQTSSNANPPTQLIFPTQIPTQTSTTTNGPNQQPGLFVVDPKNIISHLPFNYGSYGSRGFF* 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28586 29606 - CsaV3_4G000010.1 Csa04g00001 525611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00001 228 PRINTS MADS domain signature 7 27 IPR002100 GO:0003677|GO:0046983
Csa04g00001 228 PRINTS MADS domain signature 27 42 IPR002100 GO:0003677|GO:0046983
Csa04g00001 228 PRINTS MADS domain signature 42 63 IPR002100 GO:0003677|GO:0046983
Csa04g00001 228 CDD MADS_MEF2_like 6 73 IPR033896 GO:0000977|GO:0045944
Csa04g00001 228 SMART madsneu2 5 64 IPR002100 GO:0003677|GO:0046983
Csa04g00001 228 Gene3D - 83 179 - -
Csa04g00001 228 SUPERFAMILY SRF-like 6 78 IPR036879 GO:0003677|GO:0046983
Csa04g00001 228 PANTHER MADS BOX PROTEIN 5 179 - -
Csa04g00001 228 Coils Coil 138 165 - -
Csa04g00001 228 ProSiteProfiles MADS-box domain profile. 5 65 IPR002100 GO:0003677|GO:0046983
Csa04g00001 228 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 5 179 - -
Csa04g00001 228 Gene3D - 17 81 IPR036879 GO:0003677|GO:0046983
Csa04g00001 228 Coils Coil 93 120 - -
Csa04g00001 228 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 16 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04235 Csa-Chr3:37091970 Csa04g00001 Csa-Chr4:28586 4.67E-38 dispersed
Csa04g00001 Csa-Chr4:28586 Csa06g03773 Csa-Chr6:30007518 3.20E-34 dispersed
Csa04g00001 Csa-Chr4:28586 Csa01g02249 Csa-Chr1:19607563 3.60E-35 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31455 PF00319 SRF-TF 3.80E-24 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00001 - - csv:101221957 435.261