Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00018 ATGGGTGCTCCGAAGCAAAAATGGACTAGTGAAGAAGAAGCAGCTCTGAAGGCTGGAGTTGTTAAGCATGGAGCAGGAAAGTGGCGGACGATACTTAAGGATCCTGAATTCAGCAGTGTACTGTATCTTCGTTCAAATGTTGATCTCAAGGACAAGTGGAGAAATATGAGTGTCATGGCTAATGGCTGGGGATCTCGAGAGAAGGCCAGGTTGGCACTTAAGAGATTACATGCTCCTAGAAAAGACGAGAACGCTGTGGGTCCAAGTGTTGCTGCCCAAAGTGAAGACGAATTGGCAGAAGCTAAGTCTGTTTCCCTTTCCTCAGATATCAAGCAGATAACTGGTCCAAAGCGATCTAATGTAAGAAAGGAAGAGGAGGAGGAAGAAGAAGAAGAAGAAGAAAAAGAAGTAGAAAGAATAGAAAGGGATGCAAGATATGATTGCCATAGGTGGGAAAAAAGGCTGGACAATCTTATAATTGAGGCAATTACTACCCTGAGGGAACCTGGTGGCTCTAATAAGACAAAGATTACCTCGTATATAGAGGATCAATACTGGGCACCTCCAGACTTCAAGAGGTTGTTATCATCAAAATTGAAGTTCTTAACAGCTAGCCGTAAACTGGTCAAGGTTAAACGAAAATATAGGCTTCCTTCTGTGGCTGCTTCAGAGAGAAGGAGCTCTATGTTATTGTTGGAAGACCAGCAAAAAGCTAGTGTAAGAGCTGACAAGGATGATATGTGTATTCTTGCGAAAGCTCAAATCGATCTCGAATTAGCCAAGATGAGGACCATGACTTCCCAAGAGGCAGCGGCAGCTGCTGCTCGAGCAGTTGCAGAAGCAGAAGCAGCAATTGCAGAAGCTGAAGAGGCAGCTAGGGAAGCCGAGGCAGCTGAGGCTGATGCAGAAGCAGCCCAATCATTTGCAGAAGCCGCAATGAAGACACTGAAAGGAAGAAATCTCCCGAAGATGATGATCCGGGTTTGA 987 45.19 MGAPKQKWTSEEEAALKAGVVKHGAGKWRTILKDPEFSSVLYLRSNVDLKDKWRNMSVMANGWGSREKARLALKRLHAPRKDENAVGPSVAAQSEDELAEAKSVSLSSDIKQITGPKRSNVRKEEEEEEEEEEEKEVERIERDARYDCHRWEKRLDNLIIEAITTLREPGGSNKTKITSYIEDQYWAPPDFKRLLSSKLKFLTASRKLVKVKRKYRLPSVAASERRSSMLLLEDQQKASVRADKDDMCILAKAQIDLELAKMRTMTSQEAAAAAARAVAEAEAAIAEAEEAAREAEAAEADAEAAQSFAEAAMKTLKGRNLPKMMIRV* 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 139643 143250 + CsaV3_4G000180.1 Csa04g00018 525628

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00018 328 SUPERFAMILY Homeodomain-like 2 70 IPR009057 -
Csa04g00018 328 MobiDBLite consensus disorder prediction 80 138 - -
Csa04g00018 328 PANTHER SINGLE MYB HISTONE 4 1 325 IPR044597 GO:0003691
Csa04g00018 328 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Csa04g00018 328 Coils Coil 118 143 - -
Csa04g00018 328 Gene3D - 2 59 - -
Csa04g00018 328 Pfam Myb-like DNA-binding domain 5 55 IPR001005 -
Csa04g00018 328 Gene3D - 152 228 IPR036388 -
Csa04g00018 328 Coils Coil 271 308 - -
Csa04g00018 328 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Csa04g00018 328 SUPERFAMILY Winged helix DNA-binding domain 154 224 IPR036390 -
Csa04g00018 328 SMART sant 4 59 IPR001005 -
Csa04g00018 328 SMART h15plus2 149 214 IPR005818 GO:0000786|GO:0003677|GO:0006334
Csa04g00018 328 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 147 219 IPR005818 GO:0000786|GO:0003677|GO:0006334
Csa04g00018 328 PANTHER TELOMERE REPEAT-BINDING FACTOR 1 1 325 - -
Csa04g00018 328 CDD SANT_TRF 6 56 - -
Csa04g00018 328 Pfam linker histone H1 and H5 family 155 212 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00018 K09422 MYBP; transcription factor MYB, plant - csv:101218411 526.554
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00018 Csa-Chr4:139643 Csa03g04064 Csa-Chr3:35570090 1.17E-33 dispersed
Csa04g00018 Csa-Chr4:139643 Csa06g03031 Csa-Chr6:26076654 2.30E-72 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa04g00018 . 1 329 Single Myb Histone (SMH) Gene Family AT1G49950 58.3 1.5e-74 276.6
Csa06g03031 . 1 247 Single Myb Histone (SMH) Gene Family AT1G49950 52.2 2.5e-61 232.6
Csa06g03031 . 1 247 Single Myb Histone (SMH) Gene Family AT5G67580 52.4 1.4e-64 243.4
Csa06g03031 . 1 247 Single Myb Histone (SMH) Gene Family AT3G49850 50.6 3.7e-57 218.8
Csa03g04064 . 1 273 Single Myb Histone (SMH) Gene Family AT1G17520 51.7 9.5e-66 247.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005794 2 4 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 2 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31456 PF00538 Linker_histone 1.30E-07 CL0123 Csa TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g00018 Csa_Chr04 FPKM 31.169127 35.833897 32.683506 31.313469 31.451424 32.291973 34.640869 46.475311 52.158508 51.945644