Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00018 ATGGGTGCTCCGAAGCAAAAATGGACTAGTGAAGAAGAAGCAGCTCTGAAGGCTGGAGTTGTTAAGCATGGAGCAGGAAAGTGGCGGACGATACTTAAGGATCCTGAATTCAGCAGTGTACTGTATCTTCGTTCAAATGTTGATCTCAAGGACAAGTGGAGAAATATGAGTGTCATGGCTAATGGCTGGGGATCTCGAGAGAAGGCCAGGTTGGCACTTAAGAGATTACATGCTCCTAGAAAAGACGAGAACGCTGTGGGTCCAAGTGTTGCTGCCCAAAGTGAAGACGAATTGGCAGAAGCTAAGTCTGTTTCCCTTTCCTCAGATATCAAGCAGATAACTGGTCCAAAGCGATCTAATGTAAGAAAGGAAGAGGAGGAGGAAGAAGAAGAAGAAGAAGAAAAAGAAGTAGAAAGAATAGAAAGGGATGCAAGATATGATTGCCATAGGTGGGAAAAAAGGCTGGACAATCTTATAATTGAGGCAATTACTACCCTGAGGGAACCTGGTGGCTCTAATAAGACAAAGATTACCTCGTATATAGAGGATCAATACTGGGCACCTCCAGACTTCAAGAGGTTGTTATCATCAAAATTGAAGTTCTTAACAGCTAGCCGTAAACTGGTCAAGGTTAAACGAAAATATAGGCTTCCTTCTGTGGCTGCTTCAGAGAGAAGGAGCTCTATGTTATTGTTGGAAGACCAGCAAAAAGCTAGTGTAAGAGCTGACAAGGATGATATGTGTATTCTTGCGAAAGCTCAAATCGATCTCGAATTAGCCAAGATGAGGACCATGACTTCCCAAGAGGCAGCGGCAGCTGCTGCTCGAGCAGTTGCAGAAGCAGAAGCAGCAATTGCAGAAGCTGAAGAGGCAGCTAGGGAAGCCGAGGCAGCTGAGGCTGATGCAGAAGCAGCCCAATCATTTGCAGAAGCCGCAATGAAGACACTGAAAGGAAGAAATCTCCCGAAGATGATGATCCGGGTTTGA 987 45.19 MGAPKQKWTSEEEAALKAGVVKHGAGKWRTILKDPEFSSVLYLRSNVDLKDKWRNMSVMANGWGSREKARLALKRLHAPRKDENAVGPSVAAQSEDELAEAKSVSLSSDIKQITGPKRSNVRKEEEEEEEEEEEKEVERIERDARYDCHRWEKRLDNLIIEAITTLREPGGSNKTKITSYIEDQYWAPPDFKRLLSSKLKFLTASRKLVKVKRKYRLPSVAASERRSSMLLLEDQQKASVRADKDDMCILAKAQIDLELAKMRTMTSQEAAAAAARAVAEAEAAIAEAEEAAREAEAAEADAEAAQSFAEAAMKTLKGRNLPKMMIRV* 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 139643 143250 + CsaV3_4G000180.1 Csa04g00018 525628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00018 328 SUPERFAMILY Homeodomain-like 2 70 IPR009057 -
Csa04g00018 328 MobiDBLite consensus disorder prediction 80 138 - -
Csa04g00018 328 PANTHER SINGLE MYB HISTONE 4 1 325 IPR044597 GO:0003691
Csa04g00018 328 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Csa04g00018 328 Coils Coil 118 143 - -
Csa04g00018 328 Gene3D - 2 59 - -
Csa04g00018 328 Pfam Myb-like DNA-binding domain 5 55 IPR001005 -
Csa04g00018 328 Gene3D - 152 228 IPR036388 -
Csa04g00018 328 Coils Coil 271 308 - -
Csa04g00018 328 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Csa04g00018 328 SUPERFAMILY Winged helix DNA-binding domain 154 224 IPR036390 -
Csa04g00018 328 SMART sant 4 59 IPR001005 -
Csa04g00018 328 SMART h15plus2 149 214 IPR005818 GO:0000786|GO:0003677|GO:0006334
Csa04g00018 328 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 147 219 IPR005818 GO:0000786|GO:0003677|GO:0006334
Csa04g00018 328 PANTHER TELOMERE REPEAT-BINDING FACTOR 1 1 325 - -
Csa04g00018 328 CDD SANT_TRF 6 56 - -
Csa04g00018 328 Pfam linker histone H1 and H5 family 155 212 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00018 Csa-Chr4:139643 Csa03g04064 Csa-Chr3:35570090 1.17E-33 dispersed
Csa04g00018 Csa-Chr4:139643 Csa06g03031 Csa-Chr6:26076654 2.30E-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31456 PF00538 Linker_histone 1.30E-07 CL0123 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00018 K09422 - csv:101218411 526.554