Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00038 ATGGAAGGTGCCATTTCAGAAAGAGAATGGATATCTCTTAGTGGAGCTTATACTGCTGAAGAATCTGATTTTATGGCTAATTTACTCAGCAATTATTGTATTCCTAATGAGTTAAATTCAGATTTAAGCTTGGAAATTCCATCTTCTTATTGGGCTTCTTCTAATGAACCTTCTTATTATTCTTCAGATGCTTCTGATTCTTCCAATATCTATGCCCTTTCACAACCCAATAACAATCTTCCTTACACTTTCAATGACTCTAACCCCACTCTTTGGTTGCCTAATAATGGTGCTTCCTTGTCCTTGGATTTTTCCATCGAGGATGTCCGGAATGCCGATTGCTTGGACGATAACGGTTCGAATATTCGTAAAACAAGGCAATGCAGCAGGCTGCAACAATCCCCTGCTGACTCTGTTGTCAATGGGAAGAGCTCACAACCGAAACGAAGAGCCAATGATGTGATGGTGGAAGAAGCTATGAGGGATGATAAAGTTGGACCGGTTTCAGTTGAGAATTTCTCGAGGAAGAGACCTCAAAGTTTGCTTGATGTTGAAAAGACAAAAAGGAGCGGGAGGGCACGGAAGACATCGAAGATTGCTTCAGGTAGCTGCAATGAAGAGGATCAAATTGTTAGTCCAAATGGGCAATGCACAAGCAGTTTCAGCTCTGAAGATGATTGTAATGAGGCTCAAGAAAACAATGGTGGAATCACTTCTAGCTCAACCTCAAATGGAAAGCCAAGAGCCAGTAGAGGCTCAGCCACAGACCCTCAAAGCCTCTATGCAAGGAAAAGAAGAGAAAGAATCAATGAAAGGTTGAGAATCTTACAAAGCCTCGTCCCAAATGGTACAAAGGTTGACATCAGTACAATGCTTGAAGAAGCTGTTCAATACGTGAAGTTTTTGCAGCTTCAAATCAAGTTGTTGAGCTCGGATGATTTATGGATGTATGCACCAATTGCTTACAATGGAATGGACATTGGACTTAACTTGAAGTTGATGAAGCAAGACAATGCATCACAATAG 1026 41.13 MEGAISEREWISLSGAYTAEESDFMANLLSNYCIPNELNSDLSLEIPSSYWASSNEPSYYSSDASDSSNIYALSQPNNNLPYTFNDSNPTLWLPNNGASLSLDFSIEDVRNADCLDDNGSNIRKTRQCSRLQQSPADSVVNGKSSQPKRRANDVMVEEAMRDDKVGPVSVENFSRKRPQSLLDVEKTKRSGRARKTSKIASGSCNEEDQIVSPNGQCTSSFSSEDDCNEAQENNGGITSSSTSNGKPRASRGSATDPQSLYARKRRERINERLRILQSLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLNLKLMKQDNASQ* 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 228607 230307 - CsaV3_4G000380.1 Csa04g00038 525648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00038 341 MobiDBLite consensus disorder prediction 126 148 - -
Csa04g00038 341 CDD bHLH_AtIND_like 254 316 - -
Csa04g00038 341 Gene3D - 255 311 IPR036638 GO:0046983
Csa04g00038 341 MobiDBLite consensus disorder prediction 196 257 - -
Csa04g00038 341 MobiDBLite consensus disorder prediction 126 264 - -
Csa04g00038 341 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 2 338 - -
Csa04g00038 341 Pfam Helix-loop-helix DNA-binding domain 263 303 IPR011598 GO:0046983
Csa04g00038 341 MobiDBLite consensus disorder prediction 150 170 - -
Csa04g00038 341 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 253 302 IPR011598 GO:0046983
Csa04g00038 341 SMART finulus 259 308 IPR011598 GO:0046983
Csa04g00038 341 PANTHER TRANSCRIPTION FACTOR BHLH84-LIKE 2 338 - -
Csa04g00038 341 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 253 318 IPR036638 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00038 Csa-Chr4:228607 Csa05g01584 Csa-Chr5:18711066 3.68E-25 dispersed
Csa02g01899 Csa-Chr2:17969523 Csa04g00038 Csa-Chr4:228607 8.90E-56 wgd
Csa04g00038 Csa-Chr4:228607 Csa04g02472 Csa-Chr4:24696914 1.36E-57 wgd
Csa04g00038 Csa-Chr4:228607 Csa07g00687 Csa-Chr7:4913547 2.67E-63 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31457 PF00010 HLH 7.10E-09 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00038 - - csv:101217468 654.825