Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00062 ATGGCTCATCGGCTCTCCGGTGACATTCCCGACATGTCATCATCCGACGCCATTGTAAAAGAAGAGAATGAAGAAGTTGTTGTTGGGCCGTCCGAGAGGAAGTCTTCAAGGCAAAAGCTCCGACGATACGACTCCTTGGATTTAGAGTCACGTAAACTCCATGGTCATGACCATGATCATTCCTATGCCAAGGAGAATAATTGGAGTGTAATCTTACATTTAGCATTCCAAAGCATTGGCATAGTGTATGGTGACATTGGAACGTCGCCACTGTACGTGTTCTCCAGCACGTTTCCGGACGGGATAAAACACAACGATGATATCTTAGGGGTGTTGTCGTTGATCATTTATACCATAACTTTGATTCCTGTTATCAAATATGTGTTCATCGTTTTGAAAGCCAACGACAACGGAGAAGGGGGAACGTTCGCATTGTACTCACTGATATGTCGATATGCCAAAGTGGGGTTGATTCCGAATGCGGAGGTGGAAGATCGAGAAGTGTCAAATTACCAATTGAGTTTGCCGAACGAGAGAGAGAAGAGAGCTTCAAGAATTCAATCTAAGTTGGAGAAAAGTCATTTTGCAAAGGTGTTTCTTCTATTTGCAACTATGCTTGGAACCTCCATGGTTATTGGTGATGGTGTTCTTACTCCTTGTATCTCAGTGTTATCTGCTGTGGGAGGGATCAAGGAGGCTACCCCTGCAATGACAGAAGAGAGGATTGTTTGGGCATCAGTAGGAATATTGGTGTGCCTATTCATGGTTCAAAGATTTGGAACAGATAAAGTTGGATACACTTTTGCTCCAATTATCTTCATTTGGTTTGCTCTCAATGCTTCAATTGGTGTCTATAACTTCATAAAATATGACCCAACTGTCCTTAAGGCCTTAAATCCAAATTACATTTTTCGATTTTTCCAAAGAAACAAAATGGATGCTTGGATTTCACTTGGTGGCGTTGTTCTTGCTATTACAGGGACAGAAGCCTTGTTTGCGGATGTCGGTCATTTCAGCGTCCGATCAATTCAACTAAGCATGTCCGCCATTACCTACCCAGCTCTAATCTGTGCTTATGTTGGCCAAGCCTCGTTTCTTCGGAAGCACAACGATCTAGTTTCAGACACATTTTACAAGTCAATTCCAGGAAAGTTGTATTGGCCAATGTTTGTGGTGGCAGTATCAGCATCAATCATAGCAAGCCAAGCGATGATCTCAGGAACATTCTCAATAATTCAACAATCACTTTCACTTGGATGCTTCCCAAGAGTAAAAGTGGTTCATACATCAGATAAGTATGAAGGGCAAGTCTATGTTCCAGAGATAAATTACCTTCTAATGCTAGCTTGTGTTGGTGTTACTTTGGGGTTCAAAAACACTACACAGATTGGGAATGCATATGGAATAGCTGTGGTTTTTGTGATGACACTCACATCCTCTTTCCTAGTACTCATAATGGTAATGATATGGAAAACTCACATCCTTTACATAATCACTTACGTTCTCACCATTGGTACTGTGGAATTGGTATATTTGAGTTCTGTCCTTTACAAGTTTGACCAAGGAGGCTATCTCCCTCTGGCTTTTGCTGCTGCTTTGATGACAATCATGTATGTTTGGAATAGTGTGTTTAGAAAGAAATACTTTTATGAACTCAACCACAAAATCACTTCTGAAAAACTCAATGAGATAGTGAATAGAACCAACTTTAGAAGAATTCCCGGTATTGCTTTCTTCTACTCTGAGCTTGTTCAAGGCATCCCTCCCATCTTCAAGCATTACGTTGACCACGTCCCTGCATTGCAATCTGTTCTTGTCTTCATTACCATTAAATCACTTCCTGTGAGCAAGGTTCCAGCCGAAGAGCGTTTCCTCTTCAGAAAAGTAGAGGCGAAGGAGATCGATGTGTTCCGTTGTGTTGTTCGATATGGGTACACGGACGTGAGGACCGAACATGAATCATTTGAGAAGATATTACTCGAAAAACTAGACGAGTTTGAGACGGAGCGAGTTGCATCACATTCAAACGAGGAAAATGGAGTGTTGGATGGAAGAGTTGAAAAAGAGGATATTAAAGCAATTGGAAGGATTGTTGAAGCATGGAAAGATGGAGTTGTTCATTTGGTGGGAGAAAGTGAAGTGGTTGCTAAAAAAGGGTCAAGTTTTGGAAAGAGAATAATGATAAACTATGCATATAGCTTCTTAAGGAGGAATTTGAGGCAAAGTGATCAAGTCTTTGATATTCCTCGCATGCATATGCTCAAAGTAGGAATGACTTGTGAACTTTAG 2289 41.15 MAHRLSGDIPDMSSSDAIVKEENEEVVVGPSERKSSRQKLRRYDSLDLESRKLHGHDHDHSYAKENNWSVILHLAFQSIGIVYGDIGTSPLYVFSSTFPDGIKHNDDILGVLSLIIYTITLIPVIKYVFIVLKANDNGEGGTFALYSLICRYAKVGLIPNAEVEDREVSNYQLSLPNEREKRASRIQSKLEKSHFAKVFLLFATMLGTSMVIGDGVLTPCISVLSAVGGIKEATPAMTEERIVWASVGILVCLFMVQRFGTDKVGYTFAPIIFIWFALNASIGVYNFIKYDPTVLKALNPNYIFRFFQRNKMDAWISLGGVVLAITGTEALFADVGHFSVRSIQLSMSAITYPALICAYVGQASFLRKHNDLVSDTFYKSIPGKLYWPMFVVAVSASIIASQAMISGTFSIIQQSLSLGCFPRVKVVHTSDKYEGQVYVPEINYLLMLACVGVTLGFKNTTQIGNAYGIAVVFVMTLTSSFLVLIMVMIWKTHILYIITYVLTIGTVELVYLSSVLYKFDQGGYLPLAFAAALMTIMYVWNSVFRKKYFYELNHKITSEKLNEIVNRTNFRRIPGIAFFYSELVQGIPPIFKHYVDHVPALQSVLVFITIKSLPVSKVPAEERFLFRKVEAKEIDVFRCVVRYGYTDVRTEHESFEKILLEKLDEFETERVASHSNEENGVLDGRVEKEDIKAIGRIVEAWKDGVVHLVGESEVVAKKGSSFGKRIMINYAYSFLRRNLRQSDQVFDIPRMHMLKVGMTCEL* 763
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 346564 350177 - CsaV3_4G000620.1 Csa04g00062 525672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00062 762 MobiDBLite consensus disorder prediction 1 40 - -
Csa04g00062 762 TIGRFAM kup: potassium uptake protein 74 761 IPR003855 GO:0015079|GO:0016020|GO:0071805
Csa04g00062 762 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 33 760 IPR003855 GO:0015079|GO:0016020|GO:0071805
Csa04g00062 762 Pfam K+ potassium transporter 75 647 IPR003855 GO:0015079|GO:0016020|GO:0071805
Csa04g00062 762 PANTHER POTASSIUM TRANSPORTER 33 760 - -
Csa04g00062 762 MobiDBLite consensus disorder prediction 15 40 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00062 Csa-Chr4:346564 Csa07g01813 Csa-Chr7:18374740 0 dispersed
Csa04g00208 Csa-Chr4:1222425 Csa04g00062 Csa-Chr4:346564 0 transposed
Csa04g00062 Csa-Chr4:346564 Csa07g01810 Csa-Chr7:18349973 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00062 K03549 - csv:101215797 1495.33