Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00130 ATGTCGGTGCCTGCGGCTTCCTTCACCGCAGGTATATTGGAACAGGTCTCTTTTCGATTTCCAAAACAGTTGATTTTATTGTGGTTTGTGATTACTGTAACCAATGCCGATGTTGCCAACGTACTACCAACACCTTTTTTTGCACCTGCTACTCGCGATATCCCTCTACCTGCGAAATTGCCTCTTCACCAACATCACCACCGAAAATATATGTCACCACAGAGTGCGCCAGAAGCTGGACTAGCACCTTCATCTCCTCCCTACTTTGGGAATCTTATCACTTCTGGTCACCCACCCACAAGTTCAAATTTTTCCAAACCACTGATGAAAAGTGGATCAGCTCCTCCTGATGATAGGCTTGAAAACATTGCTCCCATACAATCCACTGCTGGTGCTATTCCCTCCGGCTTAGCTCAGCCACCACTTTCCCCTATTGCAGCAGACTGTTGCAAACCTGACATGGTGCTAAAACGAGGAAGTGGTGATGACTGCCATTGTGTGTATCCCATAAAAATTGATCTCCTCCTCTTAAACATATCACAGAATCCTAATTGGAAACTTTTTCTTGAAGAGTTAGCTTCTGAACTTGGTTTACGAGTCTCTCAGATTGAGCTGATAAACTTTTATGTACTTAGTTTATCGAGGTTAAATATCTCAATGGATGTTACTCCCCACACTGGGATCAGCTTTTCTGCAGCTGATGCATCTGCAATAAACTCTTCACTTACAATGCATAAAGTTCGTCTGGACCCTACGCTGGTTGGCGATTACAGTCTTCTCAACATTACCTGGTTTAAGCCTCCACCTCCTTCTCAAGCTCCAGCATATCATTTTCCAGCCTCTACATCACCGAATTCTCCTAGTAAAGGACACCATTCTAATCTGACACTTCTTCTTGGCATTGGCGCTGGTTTTTTGTTCATTGCCATTCTATTTGTGTTGATAATTTGCTTATGCACATCTCATTGTGGAAAGACTGAAGCACCTCCATTAGTAACTGAAAAACCAAGGGTTGAGGACAAAGTGCCTGTTGCAGGATCTTTCCCTCATCCGTCAAGTATGAGATTTTTAACTTATGAAGAGCTTAAAGAAGCAACTAATAACTTTGAAGCAGCCAGTATTCTGGGGGAGGGTGGATTTGGCAGGGTTTTTAAGGGTGTCTTAAGTGACGGCACAGCTGTTGCAATCAAGAGGCTTACAAGTGGAGGTCAACAAGGTGACAAGGAGTTTCTGGTTGAGGTCGAGATGCTTAGCCGATTGCATCATCGAAATCTTGTTAAACTTGTTGGCTACTACAGTAATCGTGACTCTTCACAAAATCTGCTGTGCTATGAACTTGTTGCAAATGGAAGCTTGGAGGCCTGGCTCCACGGTCCTTTAGGTGTTAATTGTCCTTTGGATTGGGACACTAGGATGAAGATTGCATTGGATGCTGCCCGAGGGCTTGCTTACCTTCACGAAGACTCACAACCATGTGTGATACACAGAGACTTCAAGGCGTCAAATATATTGCTTGAGAACAACTTCCATGCCAAAGTTGCTGACTTTGGTCTTGCTAAACAAGCTCCGGAAGGCAGGGCTAATTACCTTTCTACTCGTGTGATGGGCACATTTGGATATGTTGCCCCTGAGTATGCAATGACTGGCCATTTGCTTGTTAAAAGTGATGTTTATAGCTACGGAGTTGTACTTCTCGAGTTGCTTACTGGAAGGAAACCTGTAGATATGTCACAACCATCAGGACAGGAGAATCTGGTCACATGGGCGAGGCCGATTTTGAGAGACAAGGATCGGTTAGAAGAACTTGCTGACCCACAACTTGGAGGAAAGTATCCGAAGGAAGATTTTGTGCGGGTGTGTACCATTGCTGCAGCCTGTGTTGCTCCTGAGGCTGGCCAACGTCCAACTATGGGTGAAGTTGTACAGTCTCTTAAAATGGTGCAACGTGTTACAGAATACCAAGATTCCATCGTACCATCCTCCAATAACCGAACCAATCTTAGACAATCGTCCACAACTTTCGAGTCTGATGGATCCTCTTCAATGTTCTCTTCTGGTCCTTATTCTGGTTTAAGTGCTTTTGACAATGACAATGTATCTCGGACAGCAATTTTCTCCGAAGATCTCCACGAGGGACGATGA 2142 44.4 MSVPAASFTAGILEQVSFRFPKQLILLWFVITVTNADVANVLPTPFFAPATRDIPLPAKLPLHQHHHRKYMSPQSAPEAGLAPSSPPYFGNLITSGHPPTSSNFSKPLMKSGSAPPDDRLENIAPIQSTAGAIPSGLAQPPLSPIAADCCKPDMVLKRGSGDDCHCVYPIKIDLLLLNISQNPNWKLFLEELASELGLRVSQIELINFYVLSLSRLNISMDVTPHTGISFSAADASAINSSLTMHKVRLDPTLVGDYSLLNITWFKPPPPSQAPAYHFPASTSPNSPSKGHHSNLTLLLGIGAGFLFIAILFVLIICLCTSHCGKTEAPPLVTEKPRVEDKVPVAGSFPHPSSMRFLTYEELKEATNNFEAASILGEGGFGRVFKGVLSDGTAVAIKRLTSGGQQGDKEFLVEVEMLSRLHHRNLVKLVGYYSNRDSSQNLLCYELVANGSLEAWLHGPLGVNCPLDWDTRMKIALDAARGLAYLHEDSQPCVIHRDFKASNILLENNFHAKVADFGLAKQAPEGRANYLSTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSQPSGQENLVTWARPILRDKDRLEELADPQLGGKYPKEDFVRVCTIAAACVAPEAGQRPTMGEVVQSLKMVQRVTEYQDSIVPSSNNRTNLRQSSTTFESDGSSSMFSSGPYSGLSAFDNDNVSRTAIFSEDLHEGR* 714
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 737541 743176 - CsaV3_4G001300.1 Csa04g00130 525740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00130 713 Pfam Protein tyrosine and serine/threonine kinase 372 644 IPR001245 GO:0004672|GO:0006468
Csa04g00130 713 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ALE2 22 713 - -
Csa04g00130 713 ProSitePatterns Protein kinases ATP-binding region signature. 375 397 IPR017441 GO:0005524
Csa04g00130 713 ProSiteProfiles Protein kinase domain profile. 369 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g00130 713 ProSitePatterns Serine/Threonine protein kinases active-site signature. 493 505 IPR008271 GO:0004672|GO:0006468
Csa04g00130 713 Gene3D Transferase(Phosphotransferase) domain 1 447 668 - -
Csa04g00130 713 MobiDBLite consensus disorder prediction 656 687 - -
Csa04g00130 713 SUPERFAMILY Protein kinase-like (PK-like) 344 646 IPR011009 -
Csa04g00130 713 CDD STKc_IRAK 375 645 - -
Csa04g00130 713 Gene3D Phosphorylase Kinase; domain 1 350 446 - -
Csa04g00130 713 PANTHER OS01G0750732 PROTEIN 22 713 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02931 Csa-Chr1:25716837 Csa04g00130 Csa-Chr4:737541 7.57E-121 dispersed
Csa04g00130 Csa-Chr4:737541 Csa06g00794 Csa-Chr6:6377052 4.34E-103 dispersed
Csa06g00373 Csa-Chr6:3096514 Csa04g00130 Csa-Chr4:737541 1.45E-91 dispersed
Csa06g01204 Csa-Chr6:10211191 Csa04g00130 Csa-Chr4:737541 6.59E-70 dispersed
Csa07g01962 Csa-Chr7:19297443 Csa04g00130 Csa-Chr4:737541 8.33E-91 dispersed
Csa04g00130 Csa-Chr4:737541 Csa07g02390 Csa-Chr7:21999971 2.44E-122 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78105 PF00069 Pkinase 6.00E-44 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00130 - - csv:101219278 1387.09