Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa04g00130 | ATGTCGGTGCCTGCGGCTTCCTTCACCGCAGGTATATTGGAACAGGTCTCTTTTCGATTTCCAAAACAGTTGATTTTATTGTGGTTTGTGATTACTGTAACCAATGCCGATGTTGCCAACGTACTACCAACACCTTTTTTTGCACCTGCTACTCGCGATATCCCTCTACCTGCGAAATTGCCTCTTCACCAACATCACCACCGAAAATATATGTCACCACAGAGTGCGCCAGAAGCTGGACTAGCACCTTCATCTCCTCCCTACTTTGGGAATCTTATCACTTCTGGTCACCCACCCACAAGTTCAAATTTTTCCAAACCACTGATGAAAAGTGGATCAGCTCCTCCTGATGATAGGCTTGAAAACATTGCTCCCATACAATCCACTGCTGGTGCTATTCCCTCCGGCTTAGCTCAGCCACCACTTTCCCCTATTGCAGCAGACTGTTGCAAACCTGACATGGTGCTAAAACGAGGAAGTGGTGATGACTGCCATTGTGTGTATCCCATAAAAATTGATCTCCTCCTCTTAAACATATCACAGAATCCTAATTGGAAACTTTTTCTTGAAGAGTTAGCTTCTGAACTTGGTTTACGAGTCTCTCAGATTGAGCTGATAAACTTTTATGTACTTAGTTTATCGAGGTTAAATATCTCAATGGATGTTACTCCCCACACTGGGATCAGCTTTTCTGCAGCTGATGCATCTGCAATAAACTCTTCACTTACAATGCATAAAGTTCGTCTGGACCCTACGCTGGTTGGCGATTACAGTCTTCTCAACATTACCTGGTTTAAGCCTCCACCTCCTTCTCAAGCTCCAGCATATCATTTTCCAGCCTCTACATCACCGAATTCTCCTAGTAAAGGACACCATTCTAATCTGACACTTCTTCTTGGCATTGGCGCTGGTTTTTTGTTCATTGCCATTCTATTTGTGTTGATAATTTGCTTATGCACATCTCATTGTGGAAAGACTGAAGCACCTCCATTAGTAACTGAAAAACCAAGGGTTGAGGACAAAGTGCCTGTTGCAGGATCTTTCCCTCATCCGTCAAGTATGAGATTTTTAACTTATGAAGAGCTTAAAGAAGCAACTAATAACTTTGAAGCAGCCAGTATTCTGGGGGAGGGTGGATTTGGCAGGGTTTTTAAGGGTGTCTTAAGTGACGGCACAGCTGTTGCAATCAAGAGGCTTACAAGTGGAGGTCAACAAGGTGACAAGGAGTTTCTGGTTGAGGTCGAGATGCTTAGCCGATTGCATCATCGAAATCTTGTTAAACTTGTTGGCTACTACAGTAATCGTGACTCTTCACAAAATCTGCTGTGCTATGAACTTGTTGCAAATGGAAGCTTGGAGGCCTGGCTCCACGGTCCTTTAGGTGTTAATTGTCCTTTGGATTGGGACACTAGGATGAAGATTGCATTGGATGCTGCCCGAGGGCTTGCTTACCTTCACGAAGACTCACAACCATGTGTGATACACAGAGACTTCAAGGCGTCAAATATATTGCTTGAGAACAACTTCCATGCCAAAGTTGCTGACTTTGGTCTTGCTAAACAAGCTCCGGAAGGCAGGGCTAATTACCTTTCTACTCGTGTGATGGGCACATTTGGATATGTTGCCCCTGAGTATGCAATGACTGGCCATTTGCTTGTTAAAAGTGATGTTTATAGCTACGGAGTTGTACTTCTCGAGTTGCTTACTGGAAGGAAACCTGTAGATATGTCACAACCATCAGGACAGGAGAATCTGGTCACATGGGCGAGGCCGATTTTGAGAGACAAGGATCGGTTAGAAGAACTTGCTGACCCACAACTTGGAGGAAAGTATCCGAAGGAAGATTTTGTGCGGGTGTGTACCATTGCTGCAGCCTGTGTTGCTCCTGAGGCTGGCCAACGTCCAACTATGGGTGAAGTTGTACAGTCTCTTAAAATGGTGCAACGTGTTACAGAATACCAAGATTCCATCGTACCATCCTCCAATAACCGAACCAATCTTAGACAATCGTCCACAACTTTCGAGTCTGATGGATCCTCTTCAATGTTCTCTTCTGGTCCTTATTCTGGTTTAAGTGCTTTTGACAATGACAATGTATCTCGGACAGCAATTTTCTCCGAAGATCTCCACGAGGGACGATGA | 2142 | 44.4 | MSVPAASFTAGILEQVSFRFPKQLILLWFVITVTNADVANVLPTPFFAPATRDIPLPAKLPLHQHHHRKYMSPQSAPEAGLAPSSPPYFGNLITSGHPPTSSNFSKPLMKSGSAPPDDRLENIAPIQSTAGAIPSGLAQPPLSPIAADCCKPDMVLKRGSGDDCHCVYPIKIDLLLLNISQNPNWKLFLEELASELGLRVSQIELINFYVLSLSRLNISMDVTPHTGISFSAADASAINSSLTMHKVRLDPTLVGDYSLLNITWFKPPPPSQAPAYHFPASTSPNSPSKGHHSNLTLLLGIGAGFLFIAILFVLIICLCTSHCGKTEAPPLVTEKPRVEDKVPVAGSFPHPSSMRFLTYEELKEATNNFEAASILGEGGFGRVFKGVLSDGTAVAIKRLTSGGQQGDKEFLVEVEMLSRLHHRNLVKLVGYYSNRDSSQNLLCYELVANGSLEAWLHGPLGVNCPLDWDTRMKIALDAARGLAYLHEDSQPCVIHRDFKASNILLENNFHAKVADFGLAKQAPEGRANYLSTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSQPSGQENLVTWARPILRDKDRLEELADPQLGGKYPKEDFVRVCTIAAACVAPEAGQRPTMGEVVQSLKMVQRVTEYQDSIVPSSNNRTNLRQSSTTFESDGSSSMFSSGPYSGLSAFDNDNVSRTAIFSEDLHEGR* | 714 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 737541 | 743176 | - | CsaV3_4G001300.1 | Csa04g00130 | 525740 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa04g00130 | 713 | Pfam | Protein tyrosine and serine/threonine kinase | 372 | 644 | IPR001245 | GO:0004672|GO:0006468 | |
Csa04g00130 | 713 | PANTHER | RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ALE2 | 22 | 713 | - | - | |
Csa04g00130 | 713 | ProSitePatterns | Protein kinases ATP-binding region signature. | 375 | 397 | IPR017441 | GO:0005524 | |
Csa04g00130 | 713 | ProSiteProfiles | Protein kinase domain profile. | 369 | 647 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa04g00130 | 713 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 493 | 505 | IPR008271 | GO:0004672|GO:0006468 | |
Csa04g00130 | 713 | Gene3D | Transferase(Phosphotransferase) domain 1 | 447 | 668 | - | - | |
Csa04g00130 | 713 | MobiDBLite | consensus disorder prediction | 656 | 687 | - | - | |
Csa04g00130 | 713 | SUPERFAMILY | Protein kinase-like (PK-like) | 344 | 646 | IPR011009 | - | |
Csa04g00130 | 713 | CDD | STKc_IRAK | 375 | 645 | - | - | |
Csa04g00130 | 713 | Gene3D | Phosphorylase Kinase; domain 1 | 350 | 446 | - | - | |
Csa04g00130 | 713 | PANTHER | OS01G0750732 PROTEIN | 22 | 713 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g02931 | Csa-Chr1:25716837 | Csa04g00130 | Csa-Chr4:737541 | 7.57E-121 | dispersed | |
Csa04g00130 | Csa-Chr4:737541 | Csa06g00794 | Csa-Chr6:6377052 | 4.34E-103 | dispersed | |
Csa06g00373 | Csa-Chr6:3096514 | Csa04g00130 | Csa-Chr4:737541 | 1.45E-91 | dispersed | |
Csa06g01204 | Csa-Chr6:10211191 | Csa04g00130 | Csa-Chr4:737541 | 6.59E-70 | dispersed | |
Csa07g01962 | Csa-Chr7:19297443 | Csa04g00130 | Csa-Chr4:737541 | 8.33E-91 | dispersed | |
Csa04g00130 | Csa-Chr4:737541 | Csa07g02390 | Csa-Chr7:21999971 | 2.44E-122 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
78105 | PF00069 | Pkinase | 6.00E-44 | CL0016 | Csa | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa04g00130 | - | - | csv:101219278 | 1387.09 |