Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa04g00152 | ATGGCAAAACAACAGAAGAAATTTAGAGGAGTGAGGCAACGGCGGTGGGGCTCATGGGTCTCCGAAATTCGTCATCCTCTTCTGAAGAAAAGGGTTTGGTTGGGAACGTTTGAAACGGCTGAAGATGCCGCTCGAGCCTACGATGAGGCTGCCATTCTCATGAGCGGTCGCACTGCAAAAACAAACTTTCCATTGTCGACTGCCGTGGTCACGAACGAATCTAGAAATTTTGCTCCATTTGGGTCGTTATCGGCAATTCTCAACTCTAAACTTCGCAAGGGTTATTGTAAATCTCTTCCTCCTTCTTTGACTTGCCTTCGTCTTGACACCAAGAGTTGTCAAATTGGCGTTTGGCAGAGGCGTACAGGACGCTATCGAGTGGTCAACTCGAACTGGTTGATGATGGTGAAGCTTGATGAGAAAAAGAACGACGACGAATACCGAGTAACGGATCATGAATTGTTGGAAAAGGGTGTGGAAGATGAAGTGAGAGTTTCAAATGAAGCAGGAAGCTTAGACGAAGAAGAAAGAGCTGCTCTGCAAATGATTGAAGAACTTTTAAATAAGAAATAG | 573 | 45.2 | MAKQQKKFRGVRQRRWGSWVSEIRHPLLKKRVWLGTFETAEDAARAYDEAAILMSGRTAKTNFPLSTAVVTNESRNFAPFGSLSAILNSKLRKGYCKSLPPSLTCLRLDTKSCQIGVWQRRTGRYRVVNSNWLMMVKLDEKKNDDEYRVTDHELLEKGVEDEVRVSNEAGSLDEEERAALQMIEELLNKK* | 191 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 856671 | 857857 | - | CsaV3_4G001520.1 | Csa04g00152 | 525762 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa04g00152 | 190 | PRINTS | Ethylene responsive element binding protein signature | 8 | 19 | IPR001471 | GO:0003700|GO:0006355 | |
Csa04g00152 | 190 | PRINTS | Ethylene responsive element binding protein signature | 30 | 46 | IPR001471 | GO:0003700|GO:0006355 | |
Csa04g00152 | 190 | Pfam | AP2 domain | 7 | 55 | IPR001471 | GO:0003700|GO:0006355 | |
Csa04g00152 | 190 | CDD | AP2 | 6 | 66 | IPR001471 | GO:0003700|GO:0006355 | |
Csa04g00152 | 190 | PANTHER | ETHYLENE RESPONSE FACTOR | 1 | 190 | - | - | |
Csa04g00152 | 190 | SUPERFAMILY | DNA-binding domain | 7 | 66 | IPR016177 | GO:0003677 | |
Csa04g00152 | 190 | Gene3D | AP2/ERF domain | 6 | 66 | IPR036955 | GO:0003700|GO:0006355 | |
Csa04g00152 | 190 | ProSiteProfiles | AP2/ERF domain profile. | 7 | 64 | IPR001471 | GO:0003700|GO:0006355 | |
Csa04g00152 | 190 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 1 | 190 | - | - | |
Csa04g00152 | 190 | SMART | rav1_2 | 7 | 70 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa03g04338 | Csa-Chr3:37921638 | Csa04g00152 | Csa-Chr4:856671 | 7.09E-60 | dispersed | |
Csa04g00152 | Csa-Chr4:856671 | Csa04g02652 | Csa-Chr4:25867321 | 1.61E-36 | dispersed | |
Csa01g02012 | Csa-Chr1:16960665 | Csa04g00152 | Csa-Chr4:856671 | 6.86E-40 | wgd | |
Csa02g00191 | Csa-Chr2:1316777 | Csa04g00152 | Csa-Chr4:856671 | 9.89E-59 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
31464 | PF00847 | AP2 | 1.10E-12 | CL0081 | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa04g00152 | - | - | csv:101211468 | 375.17 |