Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00152 ATGGCAAAACAACAGAAGAAATTTAGAGGAGTGAGGCAACGGCGGTGGGGCTCATGGGTCTCCGAAATTCGTCATCCTCTTCTGAAGAAAAGGGTTTGGTTGGGAACGTTTGAAACGGCTGAAGATGCCGCTCGAGCCTACGATGAGGCTGCCATTCTCATGAGCGGTCGCACTGCAAAAACAAACTTTCCATTGTCGACTGCCGTGGTCACGAACGAATCTAGAAATTTTGCTCCATTTGGGTCGTTATCGGCAATTCTCAACTCTAAACTTCGCAAGGGTTATTGTAAATCTCTTCCTCCTTCTTTGACTTGCCTTCGTCTTGACACCAAGAGTTGTCAAATTGGCGTTTGGCAGAGGCGTACAGGACGCTATCGAGTGGTCAACTCGAACTGGTTGATGATGGTGAAGCTTGATGAGAAAAAGAACGACGACGAATACCGAGTAACGGATCATGAATTGTTGGAAAAGGGTGTGGAAGATGAAGTGAGAGTTTCAAATGAAGCAGGAAGCTTAGACGAAGAAGAAAGAGCTGCTCTGCAAATGATTGAAGAACTTTTAAATAAGAAATAG 573 45.2 MAKQQKKFRGVRQRRWGSWVSEIRHPLLKKRVWLGTFETAEDAARAYDEAAILMSGRTAKTNFPLSTAVVTNESRNFAPFGSLSAILNSKLRKGYCKSLPPSLTCLRLDTKSCQIGVWQRRTGRYRVVNSNWLMMVKLDEKKNDDEYRVTDHELLEKGVEDEVRVSNEAGSLDEEERAALQMIEELLNKK* 191
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 856671 857857 - CsaV3_4G001520.1 Csa04g00152 525762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00152 190 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Csa04g00152 190 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Csa04g00152 190 Pfam AP2 domain 7 55 IPR001471 GO:0003700|GO:0006355
Csa04g00152 190 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Csa04g00152 190 PANTHER ETHYLENE RESPONSE FACTOR 1 190 - -
Csa04g00152 190 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Csa04g00152 190 Gene3D AP2/ERF domain 6 66 IPR036955 GO:0003700|GO:0006355
Csa04g00152 190 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Csa04g00152 190 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 190 - -
Csa04g00152 190 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04338 Csa-Chr3:37921638 Csa04g00152 Csa-Chr4:856671 7.09E-60 dispersed
Csa04g00152 Csa-Chr4:856671 Csa04g02652 Csa-Chr4:25867321 1.61E-36 dispersed
Csa01g02012 Csa-Chr1:16960665 Csa04g00152 Csa-Chr4:856671 6.86E-40 wgd
Csa02g00191 Csa-Chr2:1316777 Csa04g00152 Csa-Chr4:856671 9.89E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31464 PF00847 AP2 1.10E-12 CL0081 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00152 - - csv:101211468 375.17