Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00153 ATGGCACATATTCTAATTCATGGCACCCTTCATGTCACCATTTATGAAGTCGATAAGCTTCATTCTGGTGGTCGCAATTTCTTGAAGCAGTTGGTTGAAAACGTAGAGGAAGCAGTTGGGTTTGGGAGAGGAATAACGAGGCTATATGCAACCATTGATCTTGAGAAAGCCAGAGTTGGAAGAACAAGAAGGCTTGAAAGAGAACATTCTAATCCAAAATGGTACGAAACTTTCCATATCTACTGTGCTCATATGGCTTCCAACATCATCTTCACTGTCAAAGACGACAACCCAATTGGCGCAACCTTAATCGGCAGAGCCTACTTACCCGTTCGAGAGATCATCCGTGGTGATGAAGTTGACAAATGGGTTCCAATCTTAGATGAAAGCAAGAAACCCATTCGTGGGGCACCCAAAATTCACGTCAAGTTACAGTTCTTTGATGTCACTAAGGATCAAAACTGGGGTCATGGCATCAAAAGCCCCAAGTTTCCTGGTGTTCCCTACACTTACTTCTCTCAAAGACGTGGTTGTAAGGTGACTCTGTATCAAGATGCTCACGTTCCTGATAACTTTATACCTAAAATCCCTCTTGCTGGGGGGAAGTTTTATGAGCCTCATAGATGTTGGGAAGATGTTTTTGATGCGATTATGAATGCTAAACATTTGATTTATATTTCTGGATGGTCTGTTTATACTGAGATTTCTTTGGTGAGAGATAAAAGAAGGCCAAAACCTGGTGGAGATGTGATGCTTGGTGAATTGCTTAAGAAAAAAGCTGGGGAAGGTGTTACGGTTCTTTTGCTTATTTGGAATGATACGACTTCTGTTCCTATATTGAAGGAGGAGGGGTTAATGGCAACTCATGATGAAGATACTGCTAAGTTCTTTGCTAATACTGATGTTCATTGTGTTTTGTGTCCTCGTAATCCTGATGATGGGGCTAATGTTATTCAAGATATTGCTGTTGGGACAATGTTCACTCATCATCAGAAGATTGTTGTGGTGGATAGTGCTTTGCCTAATGGGGATCCAAGTAAAAGGAGAATTGTTAGTTTTGTTGGTGGGCTTGATCTTTGTGATGGTAGGTATGATACCCCATTTCATTCCCTTTTTAGGACTTTGGATTCTGCTCATCATGACGATTTCCATCAGCCGAATTTTGCGGGCACTTCCATTAACAAAGGTGGCCCTAGAGAGCCGTGGCACGATATCCATTCCCGCCTCGAAGGACCTGTTGCGTGGGATGTTTTGCACAATTTTGAACAGAGATGGAGGAAGCAAGGTGGGAAGGATTTGCTTTTGAAATTGAGGGATTTAGATCAGATCTTCATCACTCCATCACCTGTCACCTTCCCGGACGACTTTGATAGTTGGAATGTTCAAGTTTTCAGGTCTATCGATGGTGGGGCAGCTTTTGGTTTCCCCGACAAGCCTGAAGATGCAGCAAAAGCTGGATTGGTAAGTGGAAAGGACAACACCATTGATCGAAGTATTCAAGATGCTTACATTAATGCTATTAGAAGAGCAAAGAATTTCATATACATTGAGAATCAGTATTTCCTTGGAAGCTCATTTGAATGGAGAGGTGATGATATAAAGCCTGAGATAATTAACGCCCTGCATCTAATCCCAAAGGAACTTTCTCTTAAGATTATAAGTAAGATTGAAGCAAGAGAAAGGTTCACAGTGTACATTGTTGTTCCAATGTGGCCTGAAGGATTTCCTGAAGGGGGAACAGTTCAGGCAATATTAGATTGGCAAAGGAGGACGATGGAAATGATGTATAAAGATATAGTTCTAGCTCTCAGAGCTAATGGGATTGAAGAAGATCCTAGAAACTATCTGACGTTCTTTTGTGTTGGGAATCGTGAAGTTAAAAAGCCTGGAGAATATGAACCATCAGAATCACCTGAAGAAAATTCTGATTACCTTAGAGCCCAGCAATCTAGGCGCTTCATGATTTATATTCATTCCAAGATGATGATTGTTGATGATGAATACATAATAGTGGGATCAGCCAACATCAACCAAAGATCAATGGATGGTGCAAGGGACTCAGAGATAGCAATGGGAGGTTACCAACCATATCATTTGTCAACTAGAGAGCCAGCAAGAGGCCAAATCCATGGCTTCCGTTTGGCATTGTGGTATGAACATTTAGGATTGCTTCATCAATCCTTCCTCTTCCCAGAAAGTATTGAGTGTGTTAAAAGTGTAAACCAACTTGCTGAAAAATATTGGGATCTATACTCAAGTGAGACCTTTGATCATGACCTTCCTGGCCACTTGCTTCGCTACCCCATCGCGGTCTCCGCTGACGGTCAAGTTACCGAGCTTCCTGGGTTCCAGTTCTTCCCTGATACTAAGGCGCGAGTTCTAGGTAACAAATCTAATTATATCCCTCCAATCCTCACTACTTGA 2424 41.87 MAHILIHGTLHVTIYEVDKLHSGGRNFLKQLVENVEEAVGFGRGITRLYATIDLEKARVGRTRRLEREHSNPKWYETFHIYCAHMASNIIFTVKDDNPIGATLIGRAYLPVREIIRGDEVDKWVPILDESKKPIRGAPKIHVKLQFFDVTKDQNWGHGIKSPKFPGVPYTYFSQRRGCKVTLYQDAHVPDNFIPKIPLAGGKFYEPHRCWEDVFDAIMNAKHLIYISGWSVYTEISLVRDKRRPKPGGDVMLGELLKKKAGEGVTVLLLIWNDTTSVPILKEEGLMATHDEDTAKFFANTDVHCVLCPRNPDDGANVIQDIAVGTMFTHHQKIVVVDSALPNGDPSKRRIVSFVGGLDLCDGRYDTPFHSLFRTLDSAHHDDFHQPNFAGTSINKGGPREPWHDIHSRLEGPVAWDVLHNFEQRWRKQGGKDLLLKLRDLDQIFITPSPVTFPDDFDSWNVQVFRSIDGGAAFGFPDKPEDAAKAGLVSGKDNTIDRSIQDAYINAIRRAKNFIYIENQYFLGSSFEWRGDDIKPEIINALHLIPKELSLKIISKIEARERFTVYIVVPMWPEGFPEGGTVQAILDWQRRTMEMMYKDIVLALRANGIEEDPRNYLTFFCVGNREVKKPGEYEPSESPEENSDYLRAQQSRRFMIYIHSKMMIVDDEYIIVGSANINQRSMDGARDSEIAMGGYQPYHLSTREPARGQIHGFRLALWYEHLGLLHQSFLFPESIECVKSVNQLAEKYWDLYSSETFDHDLPGHLLRYPIAVSADGQVTELPGFQFFPDTKARVLGNKSNYIPPILTT* 808
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 863917 868892 + CsaV3_4G001530.1 Csa04g00153 525763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00153 807 ProSiteProfiles C2 domain profile. 1 124 IPR000008 -
Csa04g00153 807 Gene3D Endonuclease Chain A 473 696 - -
Csa04g00153 807 Pfam Phospholipase D C terminal 726 797 IPR024632 -
Csa04g00153 807 PIRSF PLD_plant 1 807 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Csa04g00153 807 Pfam Phospholipase D Active site motif 325 363 IPR001736 GO:0003824
Csa04g00153 807 SMART C2_3c 9 123 IPR000008 -
Csa04g00153 807 SUPERFAMILY Phospholipase D/nuclease 150 435 - -
Csa04g00153 807 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 149 IPR035892 -
Csa04g00153 807 Pfam C2 domain 8 126 IPR000008 -
Csa04g00153 807 CDD C2_plant_PLD 2 147 - -
Csa04g00153 807 Gene3D C2 domain 5 157 IPR035892 -
Csa04g00153 807 PANTHER PHOSPHOLIPASE D 2 807 IPR015679 -
Csa04g00153 807 PANTHER PHOSPHOLIPASE D 2 807 - -
Csa04g00153 807 SUPERFAMILY Phospholipase D/nuclease 499 737 - -
Csa04g00153 807 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 325 363 IPR001736 GO:0003824
Csa04g00153 807 SMART pld_4 653 680 IPR001736 GO:0003824
Csa04g00153 807 SMART pld_4 325 363 IPR001736 GO:0003824
Csa04g00153 807 Pfam PLD-like domain 504 688 IPR025202 -
Csa04g00153 807 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 653 680 IPR001736 GO:0003824
Csa04g00153 807 Gene3D Endonuclease Chain A 200 440 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04088 Csa-Chr3:35829902 Csa04g00153 Csa-Chr4:863917 0 dispersed
Csa04g00153 Csa-Chr4:863917 Csa06g00598 Csa-Chr6:5064048 0 dispersed
Csa02g02386 Csa-Chr2:21161532 Csa04g00153 Csa-Chr4:863917 0 wgd
Csa04g00153 Csa-Chr4:863917 Csa07g02159 Csa-Chr7:20516256 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00153 K01115 - csv:101215246 1648.25