Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00173 ATGGCCTTTCGCCCCTTCTCCTGCTGTGGAATTGGTTTGGATCGGAAAGAAAGAGGGAAGAAACAGCAAACATGGAGGGTCTTTTCGTTGAAAGAATTACACTCGGCTACAAATAATTTTAATTATGATAACAAGCTTGGAGAAGGAGGATTTGGTAGCGTTTACTGGGGACAGCTGTGGGATGGATCACAAATTGCAGTTAAGAGGTTGAAGGTCTGGAGCAACAAGGCAGACATGGAATTCTCTGTGGAAGTTGAGATACTGGCCCGAGTTAGGCACAAGAATCTTTTAAGTTTACGTGGTTACTGTGCTGAAGGGCAAGAGCGCTTGATCGTGTATGACTACATGCCCAATCTAAGTCTACTCTCCCATCTACATGGACATCACTCATCGGAATGTCACCTTGATTGGAAACGTCGTATGAAAATCGCTATTGGGTCTGCCGAGGGAATTGCTTATCTTCACCATCAAGCAACCCCACATATCATTCATCGAGACATCAAAGCTAGCAATGTTTTGCTGGATCCTGACTTCCAAGCTCGTGTAGCTGACTTCGGATTTGCAAAACTCATCCCCGATGGGGCAACACATGTAACTACAAGAGTCAAGGGCACACTCGGATACCTTGCTCCTGAATATGCCATGTTAGGTAAGGCATCAGAGAGTTGTGATGTATACAGCTTTGGCATTCTCCTGCTTGAGCTTTCCACCGGCAAGAAGCCTCTTGAGAAATTAAGTGCAACAATGAAACGCACAATCATAGATTGGGCACTACCGATTGTAGTTGAGAAAAATTTCGAGGAGCTTGCAGACCCAAAGCTAAATGGAGACTACAATGCAGAAGAGCTAAAGAGAGTCATCCTCGTTGCGCTCTGTTGTTCCCATGCACGACCAGAGAAACGACCAACCATGCTCGAGGTGGTTGAACTACTAAAAGGAGAATCAAAAGAAAAGCTAGCGAAATTAGAAGGCGATGAACTGTTCAAGAGCCATCAAGTAGCTAAACAAACTACAGAAACACAAGCTGGTGAAGATAGCTCAGACTTCATATCAGAAGAACAGGATTCAAAAGAGAAGGTGAAAGAGAATTCAACACAAAACCCCACATGA 1110 44.32 MAFRPFSCCGIGLDRKERGKKQQTWRVFSLKELHSATNNFNYDNKLGEGGFGSVYWGQLWDGSQIAVKRLKVWSNKADMEFSVEVEILARVRHKNLLSLRGYCAEGQERLIVYDYMPNLSLLSHLHGHHSSECHLDWKRRMKIAIGSAEGIAYLHHQATPHIIHRDIKASNVLLDPDFQARVADFGFAKLIPDGATHVTTRVKGTLGYLAPEYAMLGKASESCDVYSFGILLLELSTGKKPLEKLSATMKRTIIDWALPIVVEKNFEELADPKLNGDYNAEELKRVILVALCCSHARPEKRPTMLEVVELLKGESKEKLAKLEGDELFKSHQVAKQTTETQAGEDSSDFISEEQDSKEKVKENSTQNPT* 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 992582 996743 + CsaV3_4G001730.1 Csa04g00173 525783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00173 369 PANTHER BNAA05G14800D PROTEIN 1 366 - -
Csa04g00173 369 Gene3D Phosphorylase Kinase; domain 1 13 115 - -
Csa04g00173 369 SUPERFAMILY Protein kinase-like (PK-like) 23 311 IPR011009 -
Csa04g00173 369 Gene3D Transferase(Phosphotransferase) domain 1 116 328 - -
Csa04g00173 369 ProSitePatterns Protein kinases ATP-binding region signature. 46 68 IPR017441 GO:0005524
Csa04g00173 369 Pfam Protein kinase domain 41 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g00173 369 ProSitePatterns Serine/Threonine protein kinases active-site signature. 162 174 IPR008271 GO:0004672|GO:0006468
Csa04g00173 369 PANTHER OS01G0750732 PROTEIN 1 366 - -
Csa04g00173 369 ProSiteProfiles Protein kinase domain profile. 40 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g00173 369 MobiDBLite consensus disorder prediction 332 369 - -
Csa04g00173 369 SMART serkin_6 40 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g00173 369 CDD STKc_IRAK 46 313 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02113 Csa-Chr1:18429084 Csa04g00173 Csa-Chr4:992582 6.07E-18 dispersed
Csa03g01658 Csa-Chr3:12388590 Csa04g00173 Csa-Chr4:992582 2.02E-119 dispersed
Csa04g00173 Csa-Chr4:992582 Csa01g01727 Csa-Chr1:13899884 2.33E-94 dispersed
Csa04g00173 Csa-Chr4:992582 Csa06g02950 Csa-Chr6:25534935 2.78E-88 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78107 PF00069 Pkinase 8.20E-45 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00173 - - csv:101212993 739.954