Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00174 ATGGGAAGACCTCAACAACGCTATAGAGGAGTCCGTCAAAGGCATTGGGGCTCTTGGGTCTCTGAGATTCGTCATCCTATACTGAAGACAAGGATATGGCTGGGAACTTTCGAAACGGCCGAAGACGCCGCCAGAGCATATGACGAAGCAGCCACGATTATGTGTTGTACTCCCAACAATCTCTCTACCAATCACAGCGCATCACATCATCCCTCGTCGGCACCGCTCTCGTCCAAGCTTCTAACTCCGACATCGATCGAGAAGTTGCAAAGATGTCGAATGGCTTCCCTCCAAATGACCAAAGCCCAATTCGCCGTCCGGAAATCCGCCGACCCAACTCAAAGCCCGGCCACCAAACTCGACGGCGGTCACTGGCCAGAGAAAGCGGCCAGATGGGTCCCGAGCCGGGAGGTTGAGGAGGTGCGCCGGCTTGAAGATGAGCACGTGGAGCAAATGATTCAAGAGTTGCTTGATCTTGGGTCCTTTGAGTTTTGCCCTAATAATAATAATAATCATCATCATTTTGGTTCTACAAATAATTAG 543 51.01 MGRPQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAARAYDEAATIMCCTPNNLSTNHSASHHPSSAPLSSKLLTPTSIEKLQRCRMASLQMTKAQFAVRKSADPTQSPATKLDGGHWPEKAARWVPSREVEEVRRLEDEHVEQMIQELLDLGSFEFCPNNNNNHHHFGSTNN* 181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1000954 1002181 + CsaV3_4G001740.1 Csa04g00174 525784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00174 180 ProSiteProfiles AP2/ERF domain profile. 7 51 IPR001471 GO:0003700|GO:0006355
Csa04g00174 180 SUPERFAMILY DNA-binding domain 7 55 IPR016177 GO:0003677
Csa04g00174 180 Pfam AP2 domain 7 51 IPR001471 GO:0003700|GO:0006355
Csa04g00174 180 CDD AP2 6 55 IPR001471 GO:0003700|GO:0006355
Csa04g00174 180 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 166 - -
Csa04g00174 180 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Csa04g00174 180 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Csa04g00174 180 MobiDBLite consensus disorder prediction 106 125 - -
Csa04g00174 180 Gene3D AP2/ERF domain 6 66 IPR036955 GO:0003700|GO:0006355
Csa04g00174 180 PANTHER ETHYLENE RESPONSE FACTOR 1 166 - -
Csa04g00174 180 SMART rav1_2 7 72 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa04g00174 Csa07g02109 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02417 Csa-Chr2:21323734 Csa04g00174 Csa-Chr4:1000954 2.13E-47 dispersed
Csa04g00174 Csa-Chr4:1000954 Csa07g02109 Csa-Chr7:20295175 1.92E-45 dispersed
Csa04g00174 Csa-Chr4:1000954 Csa04g02652 Csa-Chr4:25867321 9.66E-48 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31465 PF00847 AP2 2.40E-11 CL0081 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00174 - - csv:101207788 298.13