Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00175 ATGACGGATATCAGTTTGCAAGAGATCAAGAATGAGAACATTGATCTTGAGCGTATTCCCGTTGAGGAAGTGTTTGAACAGCTGAAATGCTCCCGAGAGGGTTTGTCCTCAGAGGAGGGGCGTCAGAGGCTCCAACTCTTTGGCCCAAATAAGCTTGAAGAGAAAAAAGAAAGTAAATTTCTTAAGTTTTTGGGCTTTATGTGGAATCCACTTTCATGGGTTATGGAAGCTGCAGCTATTATGGCAATAGTTCTTGCCAATGGAGGGGGACAACCACCGGACTGGCAAGATTTCGTGGGGATTACTGCATTGCTTATTATCAATTCAACAATTAGTTTTATAGAGGAAAACAATGCAGGCAATGCTGCAGCCGCACTTATGGCAGGACTTGCACCAAAAACCAAGGTTCTTCGTGATGGAAGATGGTGTGAAGAAGAGGCTGCAATCTTAGTACCAGGCGATGTTATCAGCGTTAAGTTGGGAGATATTATTCCAGCTGATGCTCGTTTGTTGGAAGGTGATCCTCTGAAGATTGATCAGTCAGCACTTACTGGTGAGTCTTTGCCGGTTACTAGGAGCTCTGGTGATGAAGTGTTTTCTGGTTCCACTGTCAAGCAAGGTGAAATCGAGGCTGTTGTAATTGCCACTGGTGTTCATACCTTTTTTGGGAAGGCTGCTCATTTGGTTGATAGCACAAATCAAGTGGGACACTTCCAAAAGGTTTTGACTGCCATTGGAAACTTCTGTATTTGCTCGATCGCCATGGGGATGGTGATAGAGATCGTAGTGATGTATCCAATTCAACATCGTAGATATAGAGATGGGATTAACAATCTTTTGGTGCTTCTCATTGGAGGGATTCCAATTGCCATGCCAACAGTGTTGTCAGTTACAATGGCTATTGGTTCTCATAGGCTATCCCAACAAGGTGCTATTACGAAGAGAATGACCGCCATTGAAGAGATGGCTGGGATGGACGTACTTTGCAGTGATAAGACAGGAACACTAACTCTCAACAAGCTGACCGTTGATAAATCCATGATTGAGGTGTTTGTAAGAGATGTAGACAAAGATAATTTGGTTTTGCTTGGAGCTAGAGCTTCCAGGGTTGAGAATCAAGATGCTATTGATGCTTGCATTGTTGGGATGCTTGGTGATCCTAAGGAGGCCAGGGAAGGCATTAAAGAAGTCCATTTCTTGCCCTTCAACCCAGTTGACAAGCGTACAGCTATTACATTTATTGACAATGATGGCAGCTGGCATCGAGTTAGCAAAGGAGCACCAGAGCAGATTATCGAACTTTGCGACCTCCGAGAAGATATCAAGAAGAAGGCTCATTCAATCATCGACAAATTCGCAGATCGTGGTCTTCGTTCACTCGCTGTTTGCCGACAAACTGTTCCAGAGAAAACCAAAGAGAGTGCTGGAGGACCATGGCAATTTGTTGGTCTGTTGCCTCTCTTTGATCCCCCAAGGCATGACAGTGCAGAGACAATTAGAAGGGCACTCAATCTCGGTGTCAACGTTAAGATGATCACTGGGGATCAATTGGCCATTGGAAAAGAAACAGGGCGTAGACTTGGAATGGGCACGAACATGTACCCATCTTCCTCACTTCTTGGACAAAGCAAGGATGAGTCAATTGCTTCTTTGCCTGTTGATGAGCTTATTGAGAAAGCTGACGGATTTGCAGGAGTCTTCCCTGAACACAAATATGAAATTGTGAGGAGGCTTCAAGAGAGGAAGCATATTTGTGGAATGACAGGAGATGGTGTGAATGATGCTCCAGCTTTGAAGAAAGCAGACATAGGAATTGCAGTTGCTGATGCAACTGATGCTGCAAGAGGCGCTTCTGATATAGTCTTGACAGAGCCAGGATTGAGCGTAATCATAAGCGCTGTTTTAACAAGCAGAGCCATTTTCCAAAGAATGAAAAACTACACCATTTATGCAGTCTCAATCACCATCCGTATTGTACTTGGCTTTATGCTAATTGCACTCATTTGGAAATTTGACTTCTCCCCTTTCATGGTTTTGATCATAGCCATTCTCAATGATGGTACCATCATGACCATCTCTAAAGATAGAGTAAAACCCTCTCCTCTTCCTGATTCATGGAAGCTCCGTGAGATCTTTGCAACTGGCGTTGTCTTGGGATCATACTTAGCGGTTATGACCGTTGTTTTCTTCTGGATAGCTAACGCTACTGATTTCTTTTCGGACAAATTTGGTGTACATTCTATTAGAGGAAATGATGGTGAGCTCACAGCAGCTGTATATCTTCAAGTCAGTACAGTAAGTCAAGCGCTCATCTTTGTGACAAGATCTCGAAGCTGGTCATTTGTCGAACGCCCTGGTCTGCTCTTAGTGTTCGCTTTCTTCGTAGCACAACTGGTGGCTACCTTGATCGCTGTGTACGCCAACTGGGGATTCGCTGAAATGAAAGGAATTGGGTGGGGATGGGCAGGAGTTATCTGGATTTACAGCGTAATCTTCTACATTCCTCTGGACGTTCTCAAGTTTGCCACTAGATATGCTTTGAGTGGAAAGGCTTGGAATAACATGATCCAAAATAGGACTGCTTTCACATCAAAGAAGGATTATGGCATTGGAGAGAGGGAGGCTCAATGGGCTGCAGCGCAACGTACCCTCCATGGCCTACAGCCTCCTGAAACATCCGAACTCTTCAATGACAAAACCAACTACAGGGAGCTGTCCGAAATCGCGGAGCAAGCCAAGAAGCGCGCTGAAGTCGCTAGGTTGAGGGAGCTTCATACATTGAAAGGACATGTGGAATCGGTGGTGAAACTAAAGGGATTGGATATTGAAACTATACAACAACACTACACTGTTTGA 2856 44.47 MTDISLQEIKNENIDLERIPVEEVFEQLKCSREGLSSEEGRQRLQLFGPNKLEEKKESKFLKFLGFMWNPLSWVMEAAAIMAIVLANGGGQPPDWQDFVGITALLIINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGRWCEEEAAILVPGDVISVKLGDIIPADARLLEGDPLKIDQSALTGESLPVTRSSGDEVFSGSTVKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAMGMVIEIVVMYPIQHRRYRDGINNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKSMIEVFVRDVDKDNLVLLGARASRVENQDAIDACIVGMLGDPKEAREGIKEVHFLPFNPVDKRTAITFIDNDGSWHRVSKGAPEQIIELCDLREDIKKKAHSIIDKFADRGLRSLAVCRQTVPEKTKESAGGPWQFVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGQSKDESIASLPVDELIEKADGFAGVFPEHKYEIVRRLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLIALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLREIFATGVVLGSYLAVMTVVFFWIANATDFFSDKFGVHSIRGNDGELTAAVYLQVSTVSQALIFVTRSRSWSFVERPGLLLVFAFFVAQLVATLIAVYANWGFAEMKGIGWGWAGVIWIYSVIFYIPLDVLKFATRYALSGKAWNNMIQNRTAFTSKKDYGIGEREAQWAAAQRTLHGLQPPETSELFNDKTNYRELSEIAEQAKKRAEVARLRELHTLKGHVESVVKLKGLDIETIQQHYTV* 952
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1008500 1013111 + CsaV3_4G001750.1 Csa04g00175 525785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00175 951 SUPERFAMILY HAD-like 325 635 IPR036412 -
Csa04g00175 951 Gene3D - 94 815 - -
Csa04g00175 951 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 34 806 IPR006534 GO:0008553|GO:0016021|GO:0120029
Csa04g00175 951 Coils Coil 902 922 - -
Csa04g00175 951 CDD P-type_ATPase_H 34 841 IPR006534 GO:0008553|GO:0016021|GO:0120029
Csa04g00175 951 SFLD p-type atpase 311 639 IPR044492 -
Csa04g00175 951 PANTHER ATPASE 9, PLASMA MEMBRANE-TYPE 4 928 - -
Csa04g00175 951 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 101 349 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Csa04g00175 951 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 563 676 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Csa04g00175 951 Pfam haloacid dehalogenase-like hydrolase 325 602 - -
Csa04g00175 951 Gene3D - 900 951 - -
Csa04g00175 951 SUPERFAMILY Calcium ATPase, transmembrane domain M 14 847 IPR023298 -
Csa04g00175 951 PRINTS H+-transporting ATPase (proton pump) signature 445 463 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Csa04g00175 951 PRINTS H+-transporting ATPase (proton pump) signature 560 576 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Csa04g00175 951 PRINTS H+-transporting ATPase (proton pump) signature 588 604 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Csa04g00175 951 PRINTS H+-transporting ATPase (proton pump) signature 619 644 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Csa04g00175 951 PRINTS H+-transporting ATPase (proton pump) signature 760 781 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Csa04g00175 951 Pfam Cation transporter/ATPase, N-terminus 19 81 IPR004014 -
Csa04g00175 951 ProSitePatterns E1-E2 ATPases phosphorylation site. 331 337 IPR018303 -
Csa04g00175 951 Gene3D - 341 488 IPR023299 GO:0000166
Csa04g00175 951 SMART Cation_ATPase_N_a_2 15 87 IPR004014 -
Csa04g00175 951 SFLD Haloacid Dehalogenase 311 639 - -
Csa04g00175 951 PANTHER CALCIUM-TRANSPORTING ATPASE 4 928 - -
Csa04g00175 951 PRINTS P-type cation-transporting ATPase superfamily signature 179 193 - -
Csa04g00175 951 PRINTS P-type cation-transporting ATPase superfamily signature 329 343 - -
Csa04g00175 951 PRINTS P-type cation-transporting ATPase superfamily signature 483 494 - -
Csa04g00175 951 PRINTS P-type cation-transporting ATPase superfamily signature 505 515 - -
Csa04g00175 951 PRINTS P-type cation-transporting ATPase superfamily signature 588 607 - -
Csa04g00175 951 PRINTS P-type cation-transporting ATPase superfamily signature 611 623 - -
Csa04g00175 951 Pfam E1-E2 ATPase 131 308 - -
Csa04g00175 951 SUPERFAMILY Calcium ATPase, transduction domain A 132 229 IPR008250 -
Csa04g00175 951 Gene3D - 326 625 IPR023214 -
Csa04g00175 951 Gene3D - 132 216 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00252 Csa-Chr2:1711130 Csa04g00175 Csa-Chr4:1008500 0 dispersed
Csa02g02323 Csa-Chr2:20671660 Csa04g00175 Csa-Chr4:1008500 0 dispersed
Csa03g04401 Csa-Chr3:38387284 Csa04g00175 Csa-Chr4:1008500 0 dispersed
Csa04g00175 Csa-Chr4:1008500 Csa05g02967 Csa-Chr5:29999659 0 dispersed
Csa04g00175 Csa-Chr4:1008500 Csa01g01854 Csa-Chr1:15592142 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00175 K01535 - csv:101212751 1810.81