Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa04g00175 | ATGACGGATATCAGTTTGCAAGAGATCAAGAATGAGAACATTGATCTTGAGCGTATTCCCGTTGAGGAAGTGTTTGAACAGCTGAAATGCTCCCGAGAGGGTTTGTCCTCAGAGGAGGGGCGTCAGAGGCTCCAACTCTTTGGCCCAAATAAGCTTGAAGAGAAAAAAGAAAGTAAATTTCTTAAGTTTTTGGGCTTTATGTGGAATCCACTTTCATGGGTTATGGAAGCTGCAGCTATTATGGCAATAGTTCTTGCCAATGGAGGGGGACAACCACCGGACTGGCAAGATTTCGTGGGGATTACTGCATTGCTTATTATCAATTCAACAATTAGTTTTATAGAGGAAAACAATGCAGGCAATGCTGCAGCCGCACTTATGGCAGGACTTGCACCAAAAACCAAGGTTCTTCGTGATGGAAGATGGTGTGAAGAAGAGGCTGCAATCTTAGTACCAGGCGATGTTATCAGCGTTAAGTTGGGAGATATTATTCCAGCTGATGCTCGTTTGTTGGAAGGTGATCCTCTGAAGATTGATCAGTCAGCACTTACTGGTGAGTCTTTGCCGGTTACTAGGAGCTCTGGTGATGAAGTGTTTTCTGGTTCCACTGTCAAGCAAGGTGAAATCGAGGCTGTTGTAATTGCCACTGGTGTTCATACCTTTTTTGGGAAGGCTGCTCATTTGGTTGATAGCACAAATCAAGTGGGACACTTCCAAAAGGTTTTGACTGCCATTGGAAACTTCTGTATTTGCTCGATCGCCATGGGGATGGTGATAGAGATCGTAGTGATGTATCCAATTCAACATCGTAGATATAGAGATGGGATTAACAATCTTTTGGTGCTTCTCATTGGAGGGATTCCAATTGCCATGCCAACAGTGTTGTCAGTTACAATGGCTATTGGTTCTCATAGGCTATCCCAACAAGGTGCTATTACGAAGAGAATGACCGCCATTGAAGAGATGGCTGGGATGGACGTACTTTGCAGTGATAAGACAGGAACACTAACTCTCAACAAGCTGACCGTTGATAAATCCATGATTGAGGTGTTTGTAAGAGATGTAGACAAAGATAATTTGGTTTTGCTTGGAGCTAGAGCTTCCAGGGTTGAGAATCAAGATGCTATTGATGCTTGCATTGTTGGGATGCTTGGTGATCCTAAGGAGGCCAGGGAAGGCATTAAAGAAGTCCATTTCTTGCCCTTCAACCCAGTTGACAAGCGTACAGCTATTACATTTATTGACAATGATGGCAGCTGGCATCGAGTTAGCAAAGGAGCACCAGAGCAGATTATCGAACTTTGCGACCTCCGAGAAGATATCAAGAAGAAGGCTCATTCAATCATCGACAAATTCGCAGATCGTGGTCTTCGTTCACTCGCTGTTTGCCGACAAACTGTTCCAGAGAAAACCAAAGAGAGTGCTGGAGGACCATGGCAATTTGTTGGTCTGTTGCCTCTCTTTGATCCCCCAAGGCATGACAGTGCAGAGACAATTAGAAGGGCACTCAATCTCGGTGTCAACGTTAAGATGATCACTGGGGATCAATTGGCCATTGGAAAAGAAACAGGGCGTAGACTTGGAATGGGCACGAACATGTACCCATCTTCCTCACTTCTTGGACAAAGCAAGGATGAGTCAATTGCTTCTTTGCCTGTTGATGAGCTTATTGAGAAAGCTGACGGATTTGCAGGAGTCTTCCCTGAACACAAATATGAAATTGTGAGGAGGCTTCAAGAGAGGAAGCATATTTGTGGAATGACAGGAGATGGTGTGAATGATGCTCCAGCTTTGAAGAAAGCAGACATAGGAATTGCAGTTGCTGATGCAACTGATGCTGCAAGAGGCGCTTCTGATATAGTCTTGACAGAGCCAGGATTGAGCGTAATCATAAGCGCTGTTTTAACAAGCAGAGCCATTTTCCAAAGAATGAAAAACTACACCATTTATGCAGTCTCAATCACCATCCGTATTGTACTTGGCTTTATGCTAATTGCACTCATTTGGAAATTTGACTTCTCCCCTTTCATGGTTTTGATCATAGCCATTCTCAATGATGGTACCATCATGACCATCTCTAAAGATAGAGTAAAACCCTCTCCTCTTCCTGATTCATGGAAGCTCCGTGAGATCTTTGCAACTGGCGTTGTCTTGGGATCATACTTAGCGGTTATGACCGTTGTTTTCTTCTGGATAGCTAACGCTACTGATTTCTTTTCGGACAAATTTGGTGTACATTCTATTAGAGGAAATGATGGTGAGCTCACAGCAGCTGTATATCTTCAAGTCAGTACAGTAAGTCAAGCGCTCATCTTTGTGACAAGATCTCGAAGCTGGTCATTTGTCGAACGCCCTGGTCTGCTCTTAGTGTTCGCTTTCTTCGTAGCACAACTGGTGGCTACCTTGATCGCTGTGTACGCCAACTGGGGATTCGCTGAAATGAAAGGAATTGGGTGGGGATGGGCAGGAGTTATCTGGATTTACAGCGTAATCTTCTACATTCCTCTGGACGTTCTCAAGTTTGCCACTAGATATGCTTTGAGTGGAAAGGCTTGGAATAACATGATCCAAAATAGGACTGCTTTCACATCAAAGAAGGATTATGGCATTGGAGAGAGGGAGGCTCAATGGGCTGCAGCGCAACGTACCCTCCATGGCCTACAGCCTCCTGAAACATCCGAACTCTTCAATGACAAAACCAACTACAGGGAGCTGTCCGAAATCGCGGAGCAAGCCAAGAAGCGCGCTGAAGTCGCTAGGTTGAGGGAGCTTCATACATTGAAAGGACATGTGGAATCGGTGGTGAAACTAAAGGGATTGGATATTGAAACTATACAACAACACTACACTGTTTGA | 2856 | 44.47 | MTDISLQEIKNENIDLERIPVEEVFEQLKCSREGLSSEEGRQRLQLFGPNKLEEKKESKFLKFLGFMWNPLSWVMEAAAIMAIVLANGGGQPPDWQDFVGITALLIINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGRWCEEEAAILVPGDVISVKLGDIIPADARLLEGDPLKIDQSALTGESLPVTRSSGDEVFSGSTVKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAMGMVIEIVVMYPIQHRRYRDGINNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKSMIEVFVRDVDKDNLVLLGARASRVENQDAIDACIVGMLGDPKEAREGIKEVHFLPFNPVDKRTAITFIDNDGSWHRVSKGAPEQIIELCDLREDIKKKAHSIIDKFADRGLRSLAVCRQTVPEKTKESAGGPWQFVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGQSKDESIASLPVDELIEKADGFAGVFPEHKYEIVRRLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLIALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLREIFATGVVLGSYLAVMTVVFFWIANATDFFSDKFGVHSIRGNDGELTAAVYLQVSTVSQALIFVTRSRSWSFVERPGLLLVFAFFVAQLVATLIAVYANWGFAEMKGIGWGWAGVIWIYSVIFYIPLDVLKFATRYALSGKAWNNMIQNRTAFTSKKDYGIGEREAQWAAAQRTLHGLQPPETSELFNDKTNYRELSEIAEQAKKRAEVARLRELHTLKGHVESVVKLKGLDIETIQQHYTV* | 952 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 1008500 | 1013111 | + | CsaV3_4G001750.1 | Csa04g00175 | 525785 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa04g00175 | 951 | SUPERFAMILY | HAD-like | 325 | 635 | IPR036412 | - | |
Csa04g00175 | 951 | Gene3D | - | 94 | 815 | - | - | |
Csa04g00175 | 951 | TIGRFAM | ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase | 34 | 806 | IPR006534 | GO:0008553|GO:0016021|GO:0120029 | |
Csa04g00175 | 951 | Coils | Coil | 902 | 922 | - | - | |
Csa04g00175 | 951 | CDD | P-type_ATPase_H | 34 | 841 | IPR006534 | GO:0008553|GO:0016021|GO:0120029 | |
Csa04g00175 | 951 | SFLD | p-type atpase | 311 | 639 | IPR044492 | - | |
Csa04g00175 | 951 | PANTHER | ATPASE 9, PLASMA MEMBRANE-TYPE | 4 | 928 | - | - | |
Csa04g00175 | 951 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 101 | 349 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Csa04g00175 | 951 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 563 | 676 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Csa04g00175 | 951 | Pfam | haloacid dehalogenase-like hydrolase | 325 | 602 | - | - | |
Csa04g00175 | 951 | Gene3D | - | 900 | 951 | - | - | |
Csa04g00175 | 951 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 14 | 847 | IPR023298 | - | |
Csa04g00175 | 951 | PRINTS | H+-transporting ATPase (proton pump) signature | 445 | 463 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Csa04g00175 | 951 | PRINTS | H+-transporting ATPase (proton pump) signature | 560 | 576 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Csa04g00175 | 951 | PRINTS | H+-transporting ATPase (proton pump) signature | 588 | 604 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Csa04g00175 | 951 | PRINTS | H+-transporting ATPase (proton pump) signature | 619 | 644 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Csa04g00175 | 951 | PRINTS | H+-transporting ATPase (proton pump) signature | 760 | 781 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Csa04g00175 | 951 | Pfam | Cation transporter/ATPase, N-terminus | 19 | 81 | IPR004014 | - | |
Csa04g00175 | 951 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 331 | 337 | IPR018303 | - | |
Csa04g00175 | 951 | Gene3D | - | 341 | 488 | IPR023299 | GO:0000166 | |
Csa04g00175 | 951 | SMART | Cation_ATPase_N_a_2 | 15 | 87 | IPR004014 | - | |
Csa04g00175 | 951 | SFLD | Haloacid Dehalogenase | 311 | 639 | - | - | |
Csa04g00175 | 951 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 4 | 928 | - | - | |
Csa04g00175 | 951 | PRINTS | P-type cation-transporting ATPase superfamily signature | 179 | 193 | - | - | |
Csa04g00175 | 951 | PRINTS | P-type cation-transporting ATPase superfamily signature | 329 | 343 | - | - | |
Csa04g00175 | 951 | PRINTS | P-type cation-transporting ATPase superfamily signature | 483 | 494 | - | - | |
Csa04g00175 | 951 | PRINTS | P-type cation-transporting ATPase superfamily signature | 505 | 515 | - | - | |
Csa04g00175 | 951 | PRINTS | P-type cation-transporting ATPase superfamily signature | 588 | 607 | - | - | |
Csa04g00175 | 951 | PRINTS | P-type cation-transporting ATPase superfamily signature | 611 | 623 | - | - | |
Csa04g00175 | 951 | Pfam | E1-E2 ATPase | 131 | 308 | - | - | |
Csa04g00175 | 951 | SUPERFAMILY | Calcium ATPase, transduction domain A | 132 | 229 | IPR008250 | - | |
Csa04g00175 | 951 | Gene3D | - | 326 | 625 | IPR023214 | - | |
Csa04g00175 | 951 | Gene3D | - | 132 | 216 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa02g00252 | Csa-Chr2:1711130 | Csa04g00175 | Csa-Chr4:1008500 | 0 | dispersed | |
Csa02g02323 | Csa-Chr2:20671660 | Csa04g00175 | Csa-Chr4:1008500 | 0 | dispersed | |
Csa03g04401 | Csa-Chr3:38387284 | Csa04g00175 | Csa-Chr4:1008500 | 0 | dispersed | |
Csa04g00175 | Csa-Chr4:1008500 | Csa05g02967 | Csa-Chr5:29999659 | 0 | dispersed | |
Csa04g00175 | Csa-Chr4:1008500 | Csa01g01854 | Csa-Chr1:15592142 | 0 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa04g00175 | K01535 | - | csv:101212751 | 1810.81 |