Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00183 ATGCCGAAACTGGTTTTGAAAGGGGGAACTAGGCCGCCATGGGTTGGCTTAGCTGCTGCTGTTTGGGTTCAAATAGCTGGTGGTTCTTCTTATAACTTCTCTCTTTATTCACACTTGCTTAAATCTGTTCTGGGTTTGAATCAGCAGCAGCTTACTGTGTTGGGTGTGGCTAATGACATTGGAGAGAGTATGGGTTTGATTCCTGGCCTCGCTTGTAACAAATTTCCTCCATGGGTTATACTTTTGTTTGGTGCTTTCTGTTGCTTTATAGGTTATGGGGCTATTTGGCTTGCTGTTAGCAGGACTGTTCCTAATCTGCCTTATTGGCTGCTATGGCTCACACATTGTGTTGCTACAAATAGCAATGCATGGTTTGGAACAGCTGTGCTTGTAACCAACATGAGGAACTTCCCTCTCAGCAGAGGTACCGTTGCTGGCATTCTTAAAGGTTATGTTGGGCTTAGTGCTGCGGTATACACGGTGATATACAGTTTGGTGCTTAGAAAGTCTGCTTTGAATTTACTGTTGTTTCTTGCAATTGGGATACCCATTTTGTGCCTAGCCATGATGTACTTTGTTCGACCTTGTACTCCGGCTTCATCAGAGGATCCATCTGAGCGTGCTCATTTTCTTTTCACACAAGCTGCTTGTGTTTTGCTAGGTCTTTTTTTAGTATCGACCACAATTCTAGATGCAACTACAACCCCTAGTGACGCTGTTGGATACACCTTAGTTGCCATTATGGTTATCCTTTTAATGTCTCCTCTTGCAGTTCCCATAAAAATGACCATTTGTGCAAGAACAAAAACACTTGGCCCTCGAGTTGATTCTTCAGAACCTTTGGCTTCTGGAGAAAGCGATTCTTCCCAAATTGAACCTTTATTGACACCATCTTCCTCAGCTACAAATCTTGGAAGTTTCTATGAGAATGATGATGCATCAGATGTTGAAACACTTCTTGCTGTGGGAGAGGGGGCGATTCACAAGAAGAAAAGAAGACCTAAAAGAGGGGAAGATTTCAAGCTCCGTGAAGCTGTAATCAAAGCTGATTTCTGGCTGCTTTGGTTCTTGTACTTCCTCGGGGTCGGTCCAGGAATAACAGTTCTCAACAATTTGTCTCAAATTGGGATTTCGTTAGGCATTAATGACGCAACATTGCTATTGGCTCTTTTCAGCTTCTGCAATTTTGTTGGTCGTTTAGGCTCCGGTGTAATTTCCGAACACTTTGTCAGGTCAAGAATGATACCTCGCTCGTTATGGATGATGTTTGCACTCGTACTCATGTCTATAGCATTCCTCCTGTACGCCTCCGCCCTCACGATTACTCTCTACATCGCCACTGGTCTCACTGGAATCAGTTACGGAGTTCTTTATTCTATGATGGTCCCTCTTGCATCTGAGATTTTCGGCCTAAAGAATTTTGGCGTCATCTTCAACTTCATGCAGCTGGGGAATCCAATAGGAGCAGTCCTTTTCTCAGTTCTACTCACTAGTACTTTATACGACATAGAAGCTGCTAAGCAAGGTTCAATAACCTGCATAGGCCAACAGTGTTTCAGGACGACTTTCTTCATCCTTTCGGGCGTTGCTGGGTTGGGTTCGATCGTGAGCTTGATTCTGACTATCAGATTAAGGCCAGTCTATCAAATGCTTTATGCCGGTGGCTCATTCCGCTTGCCTCAAAGTTCAGGTCATTGA 1698 43.93 MPKLVLKGGTRPPWVGLAAAVWVQIAGGSSYNFSLYSHLLKSVLGLNQQQLTVLGVANDIGESMGLIPGLACNKFPPWVILLFGAFCCFIGYGAIWLAVSRTVPNLPYWLLWLTHCVATNSNAWFGTAVLVTNMRNFPLSRGTVAGILKGYVGLSAAVYTVIYSLVLRKSALNLLLFLAIGIPILCLAMMYFVRPCTPASSEDPSERAHFLFTQAACVLLGLFLVSTTILDATTTPSDAVGYTLVAIMVILLMSPLAVPIKMTICARTKTLGPRVDSSEPLASGESDSSQIEPLLTPSSSATNLGSFYENDDASDVETLLAVGEGAIHKKKRRPKRGEDFKLREAVIKADFWLLWFLYFLGVGPGITVLNNLSQIGISLGINDATLLLALFSFCNFVGRLGSGVISEHFVRSRMIPRSLWMMFALVLMSIAFLLYASALTITLYIATGLTGISYGVLYSMMVPLASEIFGLKNFGVIFNFMQLGNPIGAVLFSVLLTSTLYDIEAAKQGSITCIGQQCFRTTFFILSGVAGLGSIVSLILTIRLRPVYQMLYAGGSFRLPQSSGH* 566
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1049693 1054325 + CsaV3_4G001830.1 Csa04g00183 525793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00183 565 SUPERFAMILY MFS general substrate transporter 11 198 IPR036259 -
Csa04g00183 565 MobiDBLite consensus disorder prediction 281 298 - -
Csa04g00183 565 Pfam Nodulin-like 13 260 IPR010658 -
Csa04g00183 565 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 3 565 - -
Csa04g00183 565 MobiDBLite consensus disorder prediction 272 298 - -
Csa04g00183 565 SUPERFAMILY MFS general substrate transporter 332 546 IPR036259 -
Csa04g00183 565 Gene3D MFS general substrate transporter like domains 7 274 IPR036259 -
Csa04g00183 565 PANTHER MAJOR FACILITATOR SUPERFAMILY PROTEIN 3 565 - -
Csa04g00183 565 CDD MFS_Mch1p_like 12 533 - -
Csa04g00183 565 Gene3D MFS general substrate transporter like domains 345 548 IPR036259 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02588 Csa-Chr2:22567066 Csa04g00183 Csa-Chr4:1049693 1.15E-109 dispersed
Csa04g00183 Csa-Chr4:1049693 Csa07g00091 Csa-Chr7:846941 4.49E-103 dispersed
Csa04g00183 Csa-Chr4:1049693 Csa02g01375 Csa-Chr2:13204393 3.14E-111 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00183 - - csv:101211550 1116.68