Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00203 ATGGATTTTCCCATACCAGAACCATCTCCTTCTGAAACTTCAACAATCATCTCTGCTTCAGAGTCTTCTCCACCATGTCCAAAGGGAGATCGAACAACAGACCAAATCAACCCCAATTCTCACATGGGTTTGGATCTCACCCTTTCTAATAATGATTCTGATCATGGGTCGAATCCAGAACTCAATTTAATCGACTGTTTCGATGCGAATTTAGCAACAGAACCTACAGATACAGAGACAGAGCCAAGGGTTTTCTCTTGCAATTATTGCCAAAGGAAATTCTACAGTTCTCAAGCTCTTGGGGGACACCAAAATGCTCATAAACGAGAGAGGACTTTAGCTAAGAGAACTCAAAGAGTTGGGTCTGGCTCTAATTTTGGGCTTGCTCATAGGTATTCGAGTTTGGCTTCTCTTCCTCTTCATGGGTCGTTTAATAGGTCGCTTGGAATTCAAGCTCATTCCATGGTTCATAAGCCTTCTCTTCATGTTTCTCCAATTGGGTCATCTGGAATTTACGGTCACAGTGGATGGTCAAGGCAGCCGCTCGATCAACATCCGGCGATTGGTCGGCTGATGCAAGGGAATTCACACGTTGGAAGTCATAGAGGCATTTCCTCGACCACAGGAGCTGCAAGATTTGAGGGTGTGAAGAGATTCTCTCCGGTGGCAGTCACGGAGGCGCCACCGCCGCTGGGAGGATTCTGGTGGACGGCGGTGGGGGTGGGGGTGGGGGTGGTTTTAGTCATATGA 750 47.33 MDFPIPEPSPSETSTIISASESSPPCPKGDRTTDQINPNSHMGLDLTLSNNDSDHGSNPELNLIDCFDANLATEPTDTETEPRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRTQRVGSGSNFGLAHRYSSLASLPLHGSFNRSLGIQAHSMVHKPSLHVSPIGSSGIYGHSGWSRQPLDQHPAIGRLMQGNSHVGSHRGISSTTGAARFEGVKRFSPVAVTEAPPPLGGFWWTAVGVGVGVVLVI* 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1187018 1187767 - CsaV3_4G002030.1 Csa04g00203 525813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00203 249 MobiDBLite consensus disorder prediction 8 55 - -
Csa04g00203 249 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 1 236 IPR044246 GO:0009788
Csa04g00203 249 ProSitePatterns Zinc finger C2H2 type domain signature. 87 107 IPR013087 -
Csa04g00203 249 Gene3D Classic Zinc Finger 66 126 - -
Csa04g00203 249 MobiDBLite consensus disorder prediction 1 55 - -
Csa04g00203 249 SUPERFAMILY beta-beta-alpha zinc fingers 81 112 IPR036236 -
Csa04g00203 249 ProSiteProfiles Zinc finger C2H2 type domain profile. 85 112 IPR013087 -
Csa04g00203 249 PANTHER ZINC FINGER PROTEIN 1-LIKE 1 236 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01811 Csa-Chr3:13873130 Csa04g00203 Csa-Chr4:1187018 3.27E-24 dispersed
Csa04g00203 Csa-Chr4:1187018 Csa04g02648 Csa-Chr4:25844106 1.84E-25 dispersed
Csa03g01801 Csa-Chr3:13709764 Csa04g00203 Csa-Chr4:1187018 5.18E-33 transposed
Csa03g02666 Csa-Chr3:25308349 Csa04g00203 Csa-Chr4:1187018 5.53E-15 transposed
Csa03g03696 Csa-Chr3:32879250 Csa04g00203 Csa-Chr4:1187018 4.70E-17 transposed
Csa05g01963 Csa-Chr5:23006921 Csa04g00203 Csa-Chr4:1187018 2.92E-33 transposed
Csa05g02126 Csa-Chr5:24419813 Csa04g00203 Csa-Chr4:1187018 3.10E-25 transposed
Csa02g02421 Csa-Chr2:21366191 Csa04g00203 Csa-Chr4:1187018 1.74E-35 wgd
Csa04g00203 Csa-Chr4:1187018 Csa07g02107 Csa-Chr7:20277745 2.61E-24 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31468 None None None None Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00203 - - csv:101205862 474.552