Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00205 ATGGATACAGAGGAAGCTCCATCAACACCGGTGACGCCGGGAACTCCTGGAGCTCCGCTGTTTGGACGAGTGAAAGAAAATCAGCATGGAAGTGAGAATGGTAAAAGATCTCTTCTCAAAAGTTGCATCTCTTTCAATGTTGATGATAATTGGGGGAGTGAAGAAGGTGGCTTAACTAAAATAGTCTCTTCTTGTTCATTGCCATACTCTCCTGTCTCACTTGCAAGAAAGGTGGGAGCAGAGTTTATAGGCACTTTGATTCTCATATTTGCCGGAACTGCCACTGCCATTGTGAACCAAAAGACGGGAGGAACTGAAACGTTGATCGGCCTGGCGGCTTCCACCGGCCTTGCAGTGATGATCGTGATCTTGTCAACGGGTCACATCTCCGGAGCCCATCTGAATCCAGCTGTCACCATTGCTTTTGCTGCATTGAAGCAGTTTCCTTGGAAGCATGTGCCATTGTATATTGGAGCTCAAATGGTGGCTTCTCTGTGTTCATCATTTGCATTGAAATGGACCTTTGATCCAATAATGGGAGGAGGAGCCACTATTCCTTCATGTGGATATGCCCAAGCTTTTGCTCTTGAGTTTATTATTAGCTTCAACCTCATGTTTGTCCTCACCGCGGTCGCTACGGACACTCGAGCTGTGGGAGAGTTAGCGGGAATCGCGGTAGGGGCAACGGTTATGCTCAACGTACTCATCGCGGGACAAACAACTGGAGCTTCAATGAATCCAGTAAGAACACTGGGGCCAGCCATTGCAGTAAACAATTTCAAAGCCATATGGATTTACCTCACAGCTCCCATATTAGGGACATTGTGTGGAGCTGGAATCTACACTGCAGTTAAGTTGCCTGACAAAGATGGTGATTCACGCTTGCCTTCTACTGCAGCAAGCTTTCGACGATGA 915 47.32 MDTEEAPSTPVTPGTPGAPLFGRVKENQHGSENGKRSLLKSCISFNVDDNWGSEEGGLTKIVSSCSLPYSPVSLARKVGAEFIGTLILIFAGTATAIVNQKTGGTETLIGLAASTGLAVMIVILSTGHISGAHLNPAVTIAFAALKQFPWKHVPLYIGAQMVASLCSSFALKWTFDPIMGGGATIPSCGYAQAFALEFIISFNLMFVLTAVATDTRAVGELAGIAVGATVMLNVLIAGQTTGASMNPVRTLGPAIAVNNFKAIWIYLTAPILGTLCGAGIYTAVKLPDKDGDSRLPSTAASFRR* 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1203374 1208284 - CsaV3_4G002050.1 Csa04g00205 525815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00205 304 PANTHER AQUAPORIN NIP2-1 6 292 IPR034294 -
Csa04g00205 304 CDD MIP 76 281 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa04g00205 304 Gene3D Glycerol uptake facilitator protein. 65 293 IPR023271 -
Csa04g00205 304 SUPERFAMILY Aquaporin-like 72 289 IPR023271 -
Csa04g00205 304 ProSitePatterns MIP family signature. 133 141 IPR022357 -
Csa04g00205 304 Pfam Major intrinsic protein 72 281 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa04g00205 304 PRINTS Major intrinsic protein family signature 76 95 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa04g00205 304 PRINTS Major intrinsic protein family signature 115 139 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa04g00205 304 PRINTS Major intrinsic protein family signature 152 171 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa04g00205 304 PRINTS Major intrinsic protein family signature 196 214 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa04g00205 304 PRINTS Major intrinsic protein family signature 227 249 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa04g00205 304 PRINTS Major intrinsic protein family signature 264 284 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa04g00205 304 PANTHER BNAA02G36290D PROTEIN 6 292 - -
Csa04g00205 304 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00205 Csa-Chr4:1203374 Csa05g00129 Csa-Chr5:660752 1.09E-120 dispersed
Csa04g00205 Csa-Chr4:1203374 Csa06g02624 Csa-Chr6:23064934 3.67E-23 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00205 K09874 - csv:101207376 602.053