Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00208 ATGGCAGAGGAGAAAGTAGGGGATGAAGGCACTAAGAAATTGAAAGGAAGAAAGTCTTCATGGGCAACCCTCCGCCGTGTTGACTCGCTCAATCTCGAGGCCGGTCGGGTCCCTGCCACTGCCACCCATCGACTCCCCACCGTAAATTGGCAACGAACATTGAGTTTAGCATTTCAGAGCGTGGGAGTGGTGTACGGAGACATCGGGACGTCGCCGTTGTACGTGTATGCAAGCACGTTCAGCAGTGGGAATATAGAGAACACCGACGACGTGATCGGAGTTCTGTCACTCATAATCTACACCATAGCACTGATTCCATTGTTGAAGTATGTGTTCATTGTGCTTTGGGCAAATGACAATGGTGATGGTGGAACATTTGCCCTTTACTCGTTGTTATGCCGCTATGTAAAAGTAGGGTTGATTCCAAACGAACAGCCAGAGGATAGAGAACTGTCTAATTATCAGCTTGTTGTGCCTTCTAATTTGAGAAGGTCTCAAAAGGTGAAGGAGAAGCTTGAGAATAGTATGTTTGCAAAAATTGTTCTTTTTCTCGTCACTATCGCTGGAACTTCCATGGTTATTGGTGATGGAGTTCTCACTCCATCTATTTCCGTGCTCTCAGCAGTGAGTGGAATCAGTTCACTAGGAACAGATGCAGTTGTGGGGATTTCAGTAGCAATTCTTGTAATTCTATTCTGCATTCAAAGATTTGGAACTGACAAAGTGGGATTCTCATTTGCTCCAATAATATTTACTTGGTTTGCATTTATTGGTGGAATTGGCCTTTTCAATTTGTTCAAGCATGACCCTTCTGTTCTTAAAGCTTTTAACCCTAAATATATCTTTGATTATTTCAAAAGAAATGGGAAAGAAGCTTGGGTTTCTCTTGGTGGTGTTTTTCTATGCATCACAGGGACCGAGGCCATGTTTGCTGATTTAGGTCACTTCAATGTTAGAGCTATCCAGATTAGTTTCTCTTCCATTGTATTTCCTGCTTTATTAGCAGCTTACAGTGGGCAAGCTGCATATCTCAGAAAATTCCCAGACCATGTTGCCCATACTTTCTATGACTCCATTCCAGATCCTTTATACTGGCCAACATTCGTAGTTGCGGTAGCAGCTTCAATCATAGCAAGTCAAGCAATGATCTCAGGAGCATTTGCCATAATATCACAATCTTTATCTCTAGGTTGCTTCCCGAGAGTAAAAGTAATCCACACTTCACCCACATATGAAGGCCAAGTTTACATCCCAGAGGTTAATTACCTTCTAATGTTAGCATGTGTCATCGTAACCGCTGCTTTCAAAACCACTGAAAACATCGGTCACGCCTATGGCATTGCCGTTGTCGCCGTCATGATCATGACTACCGCCATGGTTTCTCTCATCATGATTGTCATTTGGAAGACGAGTATTTGGTTGATAGTTTTATTCATTCTCGTCTTTGGCTCTATAGAACTTCTCTATTTCTCGTCGGTTCTTTACAAGTTCACTCAAGGAGGTTTTCTTCCTCTTGTTCTTGCAGTTTTTCTCATGGCTATCATGGTTGTGTGGCATTATGTTCATAGGGAAAGATATATTTTTGAACTTAAAAATAAGGTTTCTAGTGGGTACATAACTGAGTTAGCTAACAATCCTGATGTTAATCGAATCCCTGGAATTGGCCTTCTTTACTCTGAGTTGGTTCAAGGTATTCCTCCCATTTTCCCTCACTTCATTTCTAGTATTCCTTCTGTTCACTCCGTTATCGTCTTCGTCTCCATCAAGTCTATTCCGATAAGCAAAGTCACACCTAATGAACGGTTTTTGTTTCGCCAAGTGGAGCCAAGGGAGTACCGTATGTTTCGATGTGTTGTCAGATATGGATATAAAGACATAGTAACTGGCTCTGATGAGTTTGAGCGGCAGTTGGTGGAGAGCTTGAAACAATTCATACGCCAAGAACATATAATGCTAGAAGGTGTACCAATAGACCCCCCAGTTTCAGTAGCAACAGTGCATGTCGAAGGTGAAACGGCATCTGCCGAAGTGGCAAATCATTCATCTCGCCGCTCGTCAGGCTCCATTCAGCCAGTCGGCGAATCGAAATCGAGGGGGTCGTCAAATGGAACGGCTGATCGTCAAGTACTAGGAGTGGCTGCAGTGGAGGAAGAGATGGCATTTATAGAGAAAGCAATGAAAAAAGGAGTGGTTTATTTGTTGGGAGAAGCAGAAGTAGTGGCTGAACCAAAATCTTCATTGATTAAGAAAATGGTGGTTAATTATGCTTATAGTTTCTTGAGGAAGAACTTTAGGCAAGGGGAGAATGTTCTTGAGATTCCACGTACTAGGCTTTTAAGGGTTGGAATGACTTACGAAATATGA 2364 42.6 MAEEKVGDEGTKKLKGRKSSWATLRRVDSLNLEAGRVPATATHRLPTVNWQRTLSLAFQSVGVVYGDIGTSPLYVYASTFSSGNIENTDDVIGVLSLIIYTIALIPLLKYVFIVLWANDNGDGGTFALYSLLCRYVKVGLIPNEQPEDRELSNYQLVVPSNLRRSQKVKEKLENSMFAKIVLFLVTIAGTSMVIGDGVLTPSISVLSAVSGISSLGTDAVVGISVAILVILFCIQRFGTDKVGFSFAPIIFTWFAFIGGIGLFNLFKHDPSVLKAFNPKYIFDYFKRNGKEAWVSLGGVFLCITGTEAMFADLGHFNVRAIQISFSSIVFPALLAAYSGQAAYLRKFPDHVAHTFYDSIPDPLYWPTFVVAVAASIIASQAMISGAFAIISQSLSLGCFPRVKVIHTSPTYEGQVYIPEVNYLLMLACVIVTAAFKTTENIGHAYGIAVVAVMIMTTAMVSLIMIVIWKTSIWLIVLFILVFGSIELLYFSSVLYKFTQGGFLPLVLAVFLMAIMVVWHYVHRERYIFELKNKVSSGYITELANNPDVNRIPGIGLLYSELVQGIPPIFPHFISSIPSVHSVIVFVSIKSIPISKVTPNERFLFRQVEPREYRMFRCVVRYGYKDIVTGSDEFERQLVESLKQFIRQEHIMLEGVPIDPPVSVATVHVEGETASAEVANHSSRRSSGSIQPVGESKSRGSSNGTADRQVLGVAAVEEEMAFIEKAMKKGVVYLLGEAEVVAEPKSSLIKKMVVNYAYSFLRKNFRQGENVLEIPRTRLLRVGMTYEI* 788
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1222425 1227541 - CsaV3_4G002080.1 Csa04g00208 525818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00208 787 MobiDBLite consensus disorder prediction 674 704 - -
Csa04g00208 787 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 13 786 IPR003855 GO:0015079|GO:0016020|GO:0071805
Csa04g00208 787 PANTHER POTASSIUM TRANSPORTER 5 13 786 - -
Csa04g00208 787 Pfam K+ potassium transporter 57 625 IPR003855 GO:0015079|GO:0016020|GO:0071805
Csa04g00208 787 MobiDBLite consensus disorder prediction 675 704 - -
Csa04g00208 787 TIGRFAM kup: potassium uptake protein 56 787 IPR003855 GO:0015079|GO:0016020|GO:0071805
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03914 Csa-Chr3:34316948 Csa04g00208 Csa-Chr4:1222425 0 dispersed
Csa04g00208 Csa-Chr4:1222425 Csa07g01811 Csa-Chr7:18358598 0 dispersed
Csa05g02908 Csa-Chr5:29584874 Csa04g00208 Csa-Chr4:1222425 0 dispersed
Csa04g00208 Csa-Chr4:1222425 Csa04g00062 Csa-Chr4:346564 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00208 K03549 - csv:101205628 1473.76