Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00220 ATGATGAAGCTCTGGTTGTGGGTTTTCGCCATTTTTTTGGTTTCGAGGATTGCCGCTGTTCCCAATGCTGTTCCCACTGAAAGAATTTCAGGAAGTGCTGGTGATGTCTTAGAAGATAACCCAGTTGGAAGATTGAAAGTATATGTTTATGATCTTCCAAGCAAATACAATAAGAAGACTCTTCAAAAGGATCCAAGATGTCTCACTCATATGTTTGCTGCTGAGATTTACATGCATAGGTTCTTGTTGAACAGTCCTGTCAGAACACTCAATCCCGACGAAGCCGATTGGTTTTATACTCCAATTTATGTCACCTGTGACCTCACCCCCAATGGCTTACCGTTGCCCTTTAAATCCCCTCGAATGATGCGAAGTGCCATTCAACTTATCTCTTCCAATTGGCCTTATTGGAATAGAACAGAGGGCGCCGATCACTTCTTTGTTGTGCCTCATGACTTTGGTGCCTGCTTTCATTATCAGGAGGAGAAGGCTATTGACCGTGGAATTCTTCCCTTGCTCCAACGTGCAACTTTGGTTCAAACTTTTGGACAAAGGAACCATGTTTGCTTGAATGAGGGTTCCATCACTATTCCTCCATACTGTCCTCCCCAGAAAATGAAAACTCACCTGATCCCTTCGGAAACTCCTCGTTCTATCTTCGTCTATTTCCGTGGATTGTTTTATGATGTTAACAATGACCCAGAAGGTGGTTATTACGCAAGAGGTGCAAGAGCAGCTGTGTGGGAGAACTTCAAAAACAATCCTCTCTTTGACATCTCTACCGACCATCCAACGACATATTATGAAGATATGCAGCGGGCAATTTTCTGTTTATGTCCTCTTGGGTGGGCGCCATGGAGTCCAAGGCTGGTGGAAGCTGTGGTGTTTGGTTGTATCCCAGTTATCATAGCAGATGACATTGTGTTGCCTTTTGCCGATGCTATTCCATGGGAAGAAATTGGTGTGTTTGTAGACGAAAAAGACGTGTCCAACCTCGACACAATCCTGACATCAATACCACCCGACGTGATACTGAGGAAGCAAAGACTGCTAGCAAATCCATCAATGAAACGAGCAATGATGTTCCCACAACCAGCTCAATCAGGTGATGCTTTCCATCAGATTCTGAATGGCTTGGCTCGAAAATTGCCGCACGATAAGGGTGTTTACTTGAAGCCTGGTGAGAGGATTTTGAATTGGACTGCAGGACCTGTGGGGGACCTGAAGCCTTGGTAG 1236 44.82 MMKLWLWVFAIFLVSRIAAVPNAVPTERISGSAGDVLEDNPVGRLKVYVYDLPSKYNKKTLQKDPRCLTHMFAAEIYMHRFLLNSPVRTLNPDEADWFYTPIYVTCDLTPNGLPLPFKSPRMMRSAIQLISSNWPYWNRTEGADHFFVVPHDFGACFHYQEEKAIDRGILPLLQRATLVQTFGQRNHVCLNEGSITIPPYCPPQKMKTHLIPSETPRSIFVYFRGLFYDVNNDPEGGYYARGARAAVWENFKNNPLFDISTDHPTTYYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWEEIGVFVDEKDVSNLDTILTSIPPDVILRKQRLLANPSMKRAMMFPQPAQSGDAFHQILNGLARKLPHDKGVYLKPGERILNWTAGPVGDLKPW* 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1314688 1317941 + CsaV3_4G002200.1 Csa04g00220 525830

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00220 411 PANTHER BETA-1,4-XYLOSYLTRANSFERASE IRX10-RELATED 9 405 - -
Csa04g00220 411 PANTHER EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED 9 405 IPR004263 GO:0006486|GO:0016757
Csa04g00220 411 Pfam Exostosin family 44 339 IPR040911 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00220 K20870 IRX10; putative beta-1,4-xylosyltransferase IRX10 [EC:2.4.2.-] - csv:101204172 862.833
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00220 Csa-Chr4:1314688 Csa03g00694 Csa-Chr3:6224054 4.72E-30 dispersed
Csa01g00004 Csa-Chr1:42320 Csa04g00220 Csa-Chr4:1314688 0 transposed
Csa01g01313 Csa-Chr1:8469659 Csa04g00220 Csa-Chr4:1314688 1.18E-96 transposed
Csa03g03616 Csa-Chr3:32225002 Csa04g00220 Csa-Chr4:1314688 8.70E-26 transposed
Csa06g01231 Csa-Chr6:10382370 Csa04g00220 Csa-Chr4:1314688 1.82E-94 transposed
Csa02g00221 Csa-Chr2:1533762 Csa04g00220 Csa-Chr4:1314688 1.92E-27 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1357 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag0645 Cone15ag0655 . . . Csa04g00220 . . . . . . Bpe14g00820 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001872 1 2 1 2 2 2 3 2 2 2 2 2 3 2 2 3 2 4 3 2 2 2 2 2 3 1 2 3 5 2 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g00220 Csa_Chr04 FPKM 2.399222 2.217599 0.991135 0.868376 1.159387 1.461815 1.377838 1.264554 0.865225 0.661187