Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00225 ATGCAGAATCAGGAAAATCTCGATGCAGATGGGAAAGCGGAGTCTGTAATATCCATTCAAACATCAGAATACGATTCCTGGGGCAATTTGGGTGATGATGATATCATGCTGCAGAAATCTGCAATTTTTGTTCAGGAAGCTGAGAAAGTTCCATTTGTCGGTGACAAGGAACCACTTTCTTCTTTAGAAGCTGAATATAAATCGGGAAGTCCAATTTTGCTGGAGAAAATTAAGGTGCTCAGTGGCCAGTATGCTGCCATTCGTCGAACACGTGGTGATGGGAACTGCTTTTTCCGAAGCTTCATGTTTTCTTATCTTGAACACATTTTAGAGTCACAAGACAAAACTGAAGTTGATCGCATCAAAACAAATGTTGAAAATTGTAGGAAAACACTTCGAAGTCTGGGATATACAGAATTTACCTTTGAAGATTTTTTTGCGCTATTCCTTGAGCAGCTGGAAAGTGCTCTTCAAGGAAATGAATCCTCTATAAGTCATGAAGAACTTGTTATTAGGAGTCGGGACCAGTCTATCTCTGATTATGTTGTTATGTTTTTCAGGTTTGTTACATCAGGTGAAATACAAAAGCGTTCAGAATTTTTTGAGCCTTTTATTATGGGATTGACAAATGGAACGGTTGATCAGTTCTGCAAGACAGCAGTTGAACCAATGGGTGAAGAGAGTGATCATGTACACATAATTGCCTTATCTGATGCTTTGGGTGTGCCGATTCGTGTTCTGTACCTTGATCGAAGCTCCTGTGATTCTGGTGGCCTCAGTGTAAACCACCATGATTTTGTTCCTGCTACCACTGAGGTCGCAAGTGGTAGTGCTGCCTCTGAGATAAAGATCCCTTTCATTACTTTGCTCTATCGCCCTGGTCATTATGATATCCTTTATCCAAAATGA 909 40.48 MQNQENLDADGKAESVISIQTSEYDSWGNLGDDDIMLQKSAIFVQEAEKVPFVGDKEPLSSLEAEYKSGSPILLEKIKVLSGQYAAIRRTRGDGNCFFRSFMFSYLEHILESQDKTEVDRIKTNVENCRKTLRSLGYTEFTFEDFFALFLEQLESALQGNESSISHEELVIRSRDQSISDYVVMFFRFVTSGEIQKRSEFFEPFIMGLTNGTVDQFCKTAVEPMGEESDHVHIIALSDALGVPIRVLYLDRSSCDSGGLSVNHHDFVPATTEVASGSAASEIKIPFITLLYRPGHYDILYPK* 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1342718 1349059 + CsaV3_4G002250.1 Csa04g00225 525835

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00225 302 PANTHER UBIQUITIN THIOESTERASE 46 302 - -
Csa04g00225 302 PANTHER UBIQUITIN THIOLESTERASE PROTEIN OTUB 46 302 IPR019400 -
Csa04g00225 302 Gene3D Peptidase C65 Otubain, subdomain 2 91 242 IPR042467 -
Csa04g00225 302 Pfam Peptidase C65 Otubain 46 301 IPR019400 -
Csa04g00225 302 ProSiteProfiles OTU domain profile. 85 302 IPR003323 -
Csa04g00225 302 SUPERFAMILY Cysteine proteinases 52 301 IPR038765 -
Csa04g00225 302 PIRSF OTUB 21 302 IPR016615 GO:0016579|GO:0016787
Csa04g00225 302 Gene3D Peptidase C65 Otubain, subdomain 1 51 300 IPR042468 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00225 K09602 OTUB1; ubiquitin thioesterase protein OTUB1 [EC:3.4.19.12] - csv:101204814 600.512
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1349 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00225 . . . . . . . . . . . . . . . . . . Cpe03g01177 . . . . . . . . . . . . . . . . Chy07g01545 Cme07g01990
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005203 3 3 2 0 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g00225 Csa_Chr04 FPKM 4.097709 4.534925 0.585164 0.0 0.0 0.0 0.0 0.0 0.0 0.0