Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00226 ATGCATTTCGCGAAGCTTGATGACTCTCCCATGTTCCGCAAGCAGATACAATGCTTGGAGGAAAGTGCTGAATTATTGAGGGAGCGGAGTTTGAAGTTTTATAAAGGATGTCGAAAATACACTGAAGGACTTGGTGAGGGATATGATGGTGATATTGCCTTCGCAAGTTCCTTGGAAACTTTTGGGGGCGGGCATAATGACCCAATCAGTGTTGCTTTTGGAGGACCTGTCATGACCAAATTTACAATTGCTTTGAGAGAAATTGGGACATACAAGGAAGTTCTTCGTTCCCAGGTGGAGCATATGCTTAATGACAGATTACTGCAGTTTGTCAATATTGATTTGCTTGAAGTCAAGGAAGCAAGGAAGCGCTTTGACAAGGCCAGTCTTCTCTATGACCAGGCTCGTGAGAAATTCCTGTCACTGAGAAAAGGGACTAAAAGTGACGTTGCTAGTCTTTTGGAAGAGGAACTTCATAATGCAAGATCTACATTTGAGCAGGCGCGCTTTAGTCTAGTGACTGCTCTTTCTAATGTTGAGGCCAAAAAAAGGTTTGAATTTTTAGAGGCGGTCAGTGGGACAATGGATGCACATCTTCGTTATTTCAAACAGGGATATGAATTGTTGCATCAAATGGAGCCTTATATTAATCAGGTGTTGACCTATGCCCAGCAATCGAGAGAAAGGTCCAACTATGAGCAGGCAGCTCTTAGTGAACGGATGCAAGAGTACAAGAGGCAGGTTGATCGGGAGAGTAGGTGGTCGTCAAATGGTTCTAATGGTTCTCCCAATGGAGATGGTATTCAAGCCATTGGTAGAAGTTCACATAAAATGATAGAAGAAGTCATGCAATCTGCTGCAAAAGGAAAGGTTCAAACCATTCGACAAGGTTATCTCTCAAAGCGTTCTTCAAACTTGAGAGGTGACTGGAAAAGAAGGTTTTTTGTTCTTGATAGCCGGGGATTACTGTATTATTATCGCAAGCAGTGTAACAAATCATCTGCGTCTCTATCACAACTAGCAGGTCAGAGGAATAGTTCAGAGCTTGGTTCTGGCCTTTTGAGCCGCTGGCTTTCTTCCCATTATCATGGTGGGGTGCATGATGAGAAATCTGTAGCTCATCATACAGTAAACCTGCTCACTTCAACAATCAAAGTTGATGCAGACCAGTCTGATCTTAGGTTCTGCTTTCGTATCATATCACCAACCAAAAGTTATACTTTGCAGGCAGAGAGCGCACTTGATCAAATGGATTGGATTGAAAAAATAACTGGAGTTATTGCTTCATTACTAAGTTCTCAGGCTCCAGAGAGGTGTCTTGCGGGTAGTCCCATGGGAAGTGGTCATCACAGATCTACTAGTGAGAGTAGTTCTTTTGAAAGTTCTGACTTTGATCAGACTGCGGTTGAAGAATACACATCGGAAAGAAGCCTTAGTTCCTCTCATATGGACCGCCCTTCAAGAAACTTGCAACAGCAACGATCAGTGATGAAAATTGAGAAGCCAATAGACATACTTCGTAGAGTATGCGGGAACGATAAGTGTGCAGATTGTGGTGCTCCTGAACCTGACTGGGCATCTTTGAATCTTGGTGTTCTTGTTTGTATTGAATGTTCTGGTGTTCATCGTAATCTTGGTGTTCACATATCAAAGGTGAGATCCCTTACATTGGATGTCAAAGTGTGGGAACCTTCAGTTATCAGTTTGTTTCAATCCCTTGGAAATACCTTTGCGAACTCGGTTTGGGAGGAGATGCTGCAATCTAGAAGTGCCTTTCAGGTCGATCTTGTTACGGCAGGCTTGTACAAGTCTGATAAACAGAATATGCATTTTATCAGCAAACCTAGTCACTCTGATCCAATATCAGTGAAGGAGAAGTTCATTCATGCAAAGTATGCAGAAAAGGCTTTCGTTCGGAAACCAAAGGAAATTCAATATCCACATTTAGTGGCGCAACAGATATGGGATGGTGTACGCTCAAATGACAAAAAAGCCGTTTATCGTCACATCATAAACTCAGAAGCAGATGTAAATGCAGTGTATAAGCAAGTGCCATGTGGCTCCTTAACTCTTGCTAAAGTAATGTTAATGCAGGAGCCAACTGGCCTTGAGCAACATAATTACAAAGGCAGTGATTTTGTTGAGAGATCAACGAGCTCTTCGATTTCAGAAGGTACAAGTGAAGGCCAAGCTATGGAGGGTCTAGATGGCTGCACACTCCTACATCTCGCTTGTGAAACTGGAGACATTGGTATGCTCGAGCTCCTTCTACAATGTGGGGCAAATGTTAATGCCATTGACTCTCGACGTCAATCGGCACTCCATCACTGTATCACTAAAGGAAGAACTGCACTTGCCAGATTGCTTCTTTCCAGGGGAGCCGATCCACGAGCAGTGAACGGAGATGGTAAAACCCCTCTCGAGTTGGCAGTAGAATTAAAATTTAATGATGTGGAGATTCTTGCTATACTATCTGATGCAAATGGATGA 2490 42.93 MHFAKLDDSPMFRKQIQCLEESAELLRERSLKFYKGCRKYTEGLGEGYDGDIAFASSLETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLLQFVNIDLLEVKEARKRFDKASLLYDQAREKFLSLRKGTKSDVASLLEEELHNARSTFEQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALSERMQEYKRQVDRESRWSSNGSNGSPNGDGIQAIGRSSHKMIEEVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGLLYYYRKQCNKSSASLSQLAGQRNSSELGSGLLSRWLSSHYHGGVHDEKSVAHHTVNLLTSTIKVDADQSDLRFCFRIISPTKSYTLQAESALDQMDWIEKITGVIASLLSSQAPERCLAGSPMGSGHHRSTSESSSFESSDFDQTAVEEYTSERSLSSSHMDRPSRNLQQQRSVMKIEKPIDILRRVCGNDKCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVISLFQSLGNTFANSVWEEMLQSRSAFQVDLVTAGLYKSDKQNMHFISKPSHSDPISVKEKFIHAKYAEKAFVRKPKEIQYPHLVAQQIWDGVRSNDKKAVYRHIINSEADVNAVYKQVPCGSLTLAKVMLMQEPTGLEQHNYKGSDFVERSTSSSISEGTSEGQAMEGLDGCTLLHLACETGDIGMLELLLQCGANVNAIDSRRQSALHHCITKGRTALARLLLSRGADPRAVNGDGKTPLELAVELKFNDVEILAILSDANG* 830
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1357655 1371168 + CsaV3_4G002260.1 Csa04g00226 525836

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00226 829 CDD ArfGap 503 632 - -
Csa04g00226 829 ProSiteProfiles Ankyrin repeat profile. 736 768 IPR002110 GO:0005515
Csa04g00226 829 MobiDBLite consensus disorder prediction 474 493 - -
Csa04g00226 829 ProSiteProfiles ARF GTPase-activating proteins domain profile. 500 645 IPR001164 GO:0005096
Csa04g00226 829 CDD PH_ACAP 295 432 - -
Csa04g00226 829 ProSiteProfiles Ankyrin repeat region circular profile. 769 800 - -
Csa04g00226 829 SUPERFAMILY Ankyrin repeat 665 817 IPR036770 -
Csa04g00226 829 ProSiteProfiles PH domain profile. 292 428 IPR001849 -
Csa04g00226 829 PRINTS HIV Rev interacting protein signature 512 531 IPR001164 GO:0005096
Csa04g00226 829 PRINTS HIV Rev interacting protein signature 531 548 IPR001164 GO:0005096
Csa04g00226 829 PRINTS HIV Rev interacting protein signature 554 575 IPR001164 GO:0005096
Csa04g00226 829 SUPERFAMILY BAR/IMD domain-like 6 315 IPR027267 -
Csa04g00226 829 SMART 5bar 11 218 IPR004148 GO:0005515|GO:0005737
Csa04g00226 829 Pfam Ankyrin repeats (3 copies) 741 822 IPR002110 GO:0005515
Csa04g00226 829 ProSiteProfiles Ankyrin repeat profile. 769 801 IPR002110 GO:0005515
Csa04g00226 829 MobiDBLite consensus disorder prediction 253 269 - -
Csa04g00226 829 Gene3D - 285 439 IPR011993 -
Csa04g00226 829 MobiDBLite consensus disorder prediction 441 464 - -
Csa04g00226 829 Coils Coil 118 138 - -
Csa04g00226 829 Gene3D Arfaptin homology (AH) domain/BAR domain 4 251 IPR027267 -
Csa04g00226 829 Pfam BAR domain of APPL family 6 232 - -
Csa04g00226 829 SMART ANK_2a 802 829 IPR002110 GO:0005515
Csa04g00226 829 SMART ANK_2a 769 798 IPR002110 GO:0005515
Csa04g00226 829 SMART ANK_2a 736 765 IPR002110 GO:0005515
Csa04g00226 829 Coils Coil 227 247 - -
Csa04g00226 829 ProSiteProfiles Ankyrin repeat region circular profile. 736 767 - -
Csa04g00226 829 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD1 1 827 - -
Csa04g00226 829 MobiDBLite consensus disorder prediction 447 464 - -
Csa04g00226 829 SUPERFAMILY PH domain-like 207 427 - -
Csa04g00226 829 PANTHER CENTAURIN/ARF 1 827 IPR045258 GO:0005096
Csa04g00226 829 CDD BAR_SFC_plant 14 215 IPR035670 -
Csa04g00226 829 Gene3D Arf GTPase activating protein 479 646 IPR038508 -
Csa04g00226 829 Gene3D - 716 828 IPR036770 -
Csa04g00226 829 MobiDBLite consensus disorder prediction 247 270 - -
Csa04g00226 829 Pfam PH domain 294 427 IPR001849 -
Csa04g00226 829 SUPERFAMILY ArfGap/RecO-like zinc finger 500 640 IPR037278 -
Csa04g00226 829 Pfam Putative GTPase activating protein for Arf 503 640 IPR001164 GO:0005096
Csa04g00226 829 SMART arf_gap_3 500 643 IPR001164 GO:0005096
Csa04g00226 829 SMART PH_update 293 430 IPR001849 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00226 K12489 ACAP; Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein - csv:101203435 1583.16
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00226 Csa-Chr4:1357655 Csa05g01197 Csa-Chr5:12434134 0 dispersed
Csa04g00226 Csa-Chr4:1357655 Csa01g02626 Csa-Chr1:23243264 1.20E-18 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1342 . . . Bda11g00373 Bpe13g00827 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00226 . . Blo02g00208 . . Bda11g00373 Bpe14g00814 . . Bma06g01328 . . . . . . . . Cpe03g01178 . . . . . . . . . . . . . . . . Chy07g01544 Cme07g01989
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004542 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 2 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g00226 Csa_Chr04 FPKM 13.166728 14.647274 17.30562 15.867593 10.432954 10.045973 12.002224 11.164866 10.13665 11.04568