Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00228 ATGGGGAAGAAAAGATATACCGTTAAGTTTATGATTCACTTACTGTTAGTATTCTCTTTTCTCCATCTCTCCGACGCAAAATGCCAGGAAAGAACAAGCAATCACTTCGCTTCTTCAGGACCGCCATTGCCAACAACATCATCAACACCAACAAGCTCTCCACAGTTCAAAAATGGCGTCCGAAGAATCATCTTCAGTGTTCTATTAGGTGTAGTTACAGGCTTAATGGGCTCCTTTCTTTTTGCTTGTTTAATCCGCAGCTTCGTCCGTTACCTAAACAAAACTCCAATTCTCAAAGGCCCTGTCATATTCTCCCCCATAATCGACCCTAAAACCCTCCATCTCGCCCTCAGAAATGAAAATCAGCTTCTGGGGTCCAATCCCCATGGGAAATACTACAGGACCATTCTAGACAACGGGCTGACGATCGCCGTGAAACGGCTCGAAGGGTCCGAGAACACGGCAAGGAAGTCGGAGAAGAGGCAAACACAGCTGCAACTTGAGAGGCTGGCCAGGCTTAGACATAGGAATCTGATGAGCTTAAGGGCTTATGTTGGGGAAGGAGAAGGAGTGTGGTTGGTTTATGATTATGTGGGAACAGGAAGCCTTGAGGATGTGATGAAGAGAGTGAGGGAGAATGAAGTAAGGTTGGGATGGGAAATTAGGCTTGGTATTGCAGTTGGGGTTATAAAGGGTCTTCAGTATCTTCATTTTGAGTGTGATCCTCAGATTCTTCACTATAATTTGAAGCCTTCAAATGTAATGTTGGATGGTGAGTATGAACCAAGGTTGGCTGACTGTGGCTTGCCTAAGTTGTTCTCTAACTTGAACATGGCTTCTACCTCTGCCTATACCTCACCTGAGTGCTTGCAGGACTGCAGGTATAGCGATAAGAGCGACATCTTCAGCTTCGGGATGATTTTGGCTGTTCTACTGACAGGTAAAGATCCAACAGATCCGTTTTTTGGAGAAGCAGCAAGCGGAGGTAGTTTAGGTCAGTGGCTAAGACATTTACAGGTTGCCGGGGAGGCACGAGAAGCGCTAGATAAGAGTATCATAGGAGAAGAAGGGGAAGAGGATGAAATGCTAATGGCAGTGAGGATTGCTGTTGTTTGCTTATCAGAACAGGCAATAGATAGACCTTCAAGTGATGAGTTGGTACACATGTTAACCCAATTGCATAGTTTTTGA 1191 45.17 MGKKRYTVKFMIHLLLVFSFLHLSDAKCQERTSNHFASSGPPLPTTSSTPTSSPQFKNGVRRIIFSVLLGVVTGLMGSFLFACLIRSFVRYLNKTPILKGPVIFSPIIDPKTLHLALRNENQLLGSNPHGKYYRTILDNGLTIAVKRLEGSENTARKSEKRQTQLQLERLARLRHRNLMSLRAYVGEGEGVWLVYDYVGTGSLEDVMKRVRENEVRLGWEIRLGIAVGVIKGLQYLHFECDPQILHYNLKPSNVMLDGEYEPRLADCGLPKLFSNLNMASTSAYTSPECLQDCRYSDKSDIFSFGMILAVLLTGKDPTDPFFGEAASGGSLGQWLRHLQVAGEAREALDKSIIGEEGEEDEMLMAVRIAVVCLSEQAIDRPSSDELVHMLTQLHSF* 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1372960 1374834 + CsaV3_4G002280.1 Csa04g00228 525838

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00228 396 Gene3D Phosphorylase Kinase; domain 1 111 197 - -
Csa04g00228 396 PANTHER LEUCINE RICH REPEAT KINASE 2 12 394 - -
Csa04g00228 396 PANTHER INACTIVE LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE CORYNE 12 394 - -
Csa04g00228 396 SUPERFAMILY Protein kinase-like (PK-like) 121 390 IPR011009 -
Csa04g00228 396 Coils Coil 148 168 - -
Csa04g00228 396 Pfam Protein kinase domain 120 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g00228 396 MobiDBLite consensus disorder prediction 33 54 - -
Csa04g00228 396 ProSiteProfiles Protein kinase domain profile. 118 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g00228 396 Gene3D Transferase(Phosphotransferase) domain 1 199 395 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00228 - - - csv:105435166 763.837
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00228 Csa-Chr4:1372960 Csa06g00777 Csa-Chr6:6242040 8.23E-121 dispersed
Csa04g00228 Csa-Chr4:1372960 Csa01g00213 Csa-Chr1:1379747 3.73E-44 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1341 . . . . . . . . . . . . . . . . . . . . . . . . Cla06g00159 . . . . . . Cone14ag0652 Cone15ag0664 . . . Csa04g00228 Chy11g01830 Cme11g02366 . . . . . . . Bma06g01329 . . . . . . . . Cpe03g01179 Bhi12g02390 . . . . . . . . . . . . . Lsi09g01767 . Chy07g01542 Cme07g01988
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009395 0 1 0 2 1 1 2 1 1 1 1 1 2 1 0 2 1 2 2 1 1 1 1 1 1 1 0 2 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78108 PF00069 Pkinase 4.80E-31 CL0016 Csa PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g00228 Csa_Chr04 FPKM 7.331606 10.201876 2.15338 2.621026 3.172611 5.052699 4.421244 26.990685 30.21084 30.636162