Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00229 ATGGACAACACTCGTTTGGCCGTTGCATCCATTGGAAAGCTAATGTTTGCTCAATTTTCAGAATTAGTCAATGATTTTTACAATAACGGTTTGCCTTCTAACCTTTCTGCAAGTAGAAATCCAAGCTTGGATTATGGCTTTAAAGGTGCTGAAATTGCCATGGCTTCTTATTGCTCTGAGCTTCAATATCTTGCAAATCCTGTCACAAGTCACGTCCAAAGCGCCGAGCAACACAACCAAGATGTTAACTCTCTTGGTTTAATTTCCTCAAGGAAAACAGCTGAAGCCATCGATATTCTTAAACTCATGTCTTCCACATTCTTAGTTGCTTTATGTCAAGCAATTGACTTGAGGCATTTGGAGGAGAACTTGAAGAGCGAGGTGAAAAGCACAGTTAGCCAAGTAGCAAAAAAAGTGTTGACTACCTCTTCCAATGGCGCACTTCATCCATCAAGATTTTGTGAGAAAGATTTACTCAAAGTTGTCGACAGAGAATACACTTTTGCATACATAGATGATCCATGCAGTGCTACCTACCCTCTTATGCAGAAGTTAAGGCAAATCCTTGTCGAGCATGCACTTAAAAATGGTGATAGCGAAACGAACGAGAACACCTCAATCTTCCAAAAGATTGGTGCTTTCGAAGAGGAGTTGAAGGCAATCTTACCAAAGGAGGTAGAAAACGTAAGGCTGGCATATGAAAATGGAAATTCCAAAATTGAAAATCAAATCAAGGATTGCAGGTCTTACCCATTATACAAATTTGTGAGAGAGGAGTTGGGAACAAGATTGCTAACCGGCGAAAAGGTAATTTCTCCAGGAGAAGAGTGCGAGAAGGTATTCACTGCTTTAAGTCAAGGAAAGATGATCGATTCGATCTTCGAATGCTTGAAGGAGTGGAATGGAGCACCCCTTCCCATTTGCTAA 927 40.67 MDNTRLAVASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKSEVKSTVSQVAKKVLTTSSNGALHPSRFCEKDLLKVVDREYTFAYIDDPCSATYPLMQKLRQILVEHALKNGDSETNENTSIFQKIGAFEEELKAILPKEVENVRLAYENGNSKIENQIKDCRSYPLYKFVREELGTRLLTGEKVISPGEECEKVFTALSQGKMIDSIFECLKEWNGAPLPIC* 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1378889 1379815 - CsaV3_4G002290.1 Csa04g00229 525839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00229 308 Gene3D - 121 242 IPR023144 -
Csa04g00229 308 PANTHER PHENYLALANINE AMMONIA-LYASE 1 308 - -
Csa04g00229 308 PANTHER HISTIDINE AMMONIA-LYASE 1 308 IPR001106 -
Csa04g00229 308 Gene3D Fumarase/aspartase (Central domain) 1 303 - -
Csa04g00229 308 SUPERFAMILY L-aspartase-like 1 308 IPR008948 GO:0003824
Csa04g00229 308 Pfam Aromatic amino acid lyase 1 128 IPR001106 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00229 Csa-Chr4:1378889 Csa04g00232 Csa-Chr4:1387653 0 dispersed
Csa04g00229 Csa-Chr4:1378889 Csa04g00231 Csa-Chr4:1382724 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00229 K10775 - csv:101204574 605.52