Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00230 ATGGCTTGTCAAAATGGTTCGTTAGAGAGCTTGTGCATGAAGGGTCAGGATCCACTCAATTGGGGTTTGGCGGCTGAGTCCATGAAGGGAAGTCATTTGGATGAGGTGAAACGGATGGTGGAAGAGTACCGAAGGCCTCTGGTGAAGCTTGGAGGAGAAACTCTCACCATTTCTCAGGTTGCTGCCATTGCCACCCGGCCGGTGTCAAAGCTAGCTAAAGGCACTGATAGTTATGGTGTCACTACTGGCTTTGGTGCTACTTCCCATAGAAGGACCAATCAAGGTGGAGCTCTTCAAAAGGAGTTGATTCGGTTTTTGAATTCTGGCATCTTTGGAAATGGAAGTGAATCAAATCACACTTTGCCTCACTCTGCAACAAGAGCAGCTATGTTGGTGAGAATCAACACTCTTCTTCAAGGGTATTCTGGCATTCGATTCGAGATTTTGGAAGCCATTACTAATCTCTTGAACCACAACGTCACTCCATGTTTGCCACTTCGAGGAACAATTACTGCTTCGGGAGATTTGGTTCCTTTGTCTTATATTGCGGGGTTGCTTACCGGTCGTCACAATTCAAAAGCTATTGGACCGAATGGAGAAACCCTTGATGCAAAGGCTGCTTTTACACAGGCTGGTATTGATTCTGGGTTCTTTGAATTGCAGCCTAAGGAAGGTCTTGCTCTTGTTAATGGCACTGCCGTCGGTTCTGGATTGGCTTCCATTGTTCTCTTTGAGGCAAATATTTTAGCCGTTTTGTCTGAAATTTTATCGGCCATATTTGCTGAGGTGATGCAAGGAAAGCCCGAATTCACCGACCATTTGACCCATAAGTTGAAGCACCATCCTGGTCAAATTGAAGCAGCTGCAATCATGGAGCACATTTTAGATGGAAGCTCCTACATGAAAACGGCAAAGAAATTGCATGAAATGGATCCTCTCCAAAAGCCCAAACAAGATCGTTACGCTCTTAGAACTTCTCCTCAATGGTTGGGTCCTTTGATTGAAGTGATTCGTTTCTCCACCAAGTCAATTGAGGCGGGAAATTAA 1047 45.18 MACQNGSLESLCMKGQDPLNWGLAAESMKGSHLDEVKRMVEEYRRPLVKLGGETLTISQVAAIATRPVSKLAKGTDSYGVTTGFGATSHRRTNQGGALQKELIRFLNSGIFGNGSESNHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITNLLNHNVTPCLPLRGTITASGDLVPLSYIAGLLTGRHNSKAIGPNGETLDAKAAFTQAGIDSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKKLHEMDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEAGN* 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1379904 1380990 - CsaV3_4G002300.1 Csa04g00230 525840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00230 348 CDD PAL-HAL 53 345 IPR001106 -
Csa04g00230 348 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 168 184 IPR022313 GO:0016841
Csa04g00230 348 PANTHER HISTIDINE AMMONIA-LYASE 13 345 IPR001106 -
Csa04g00230 348 Gene3D Fumarase/aspartase (Central domain) 233 347 - -
Csa04g00230 348 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 13 345 - -
Csa04g00230 348 Pfam Aromatic amino acid lyase 57 345 IPR001106 -
Csa04g00230 348 Gene3D - 9 232 IPR024083 -
Csa04g00230 348 SUPERFAMILY L-aspartase-like 17 345 IPR008948 GO:0003824
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00230 Csa-Chr4:1379904 Csa04g00232 Csa-Chr4:1387653 0 dispersed
Csa04g00230 Csa-Chr4:1379904 Csa04g00231 Csa-Chr4:1382724 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00230 K10775 - csv:101204574 642.114