Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00232 ATGGCCCAAAAGGTTAATGCTAACCAAAATGGTTCAATGGAAAGCTTGTGCAGCAGCCATCAGGATCCACTCAACTGGGGTTTGGCCGCTGATTCCATGAAGGGAAGCCATCTGGATGAGGTCAAGCGGATGGTGGAAGAGTATCGAAGGCCTTTGGTTAAGCTTGGAGGACAAACTCTCACCATTTCTCAGGTTGCTGCCATTGCCACTCGTGATAATGATGTCCTTGTAGAATTGGCCGAGTCTGCAAGGGCCGGTGTCAAAGCTAGCAGCGATTGGGTGATGGAGAGCATGGGTAAAGGCACTGATAGTTATGGTGTTACTACTGGCTTTGGTGCTACTTCCCATAGAAGAACCAATCAAGGTGGAGCTCTTCAAAAGGAGTTGATTCGGTTTTTGAATTCTGGCATCTTTGGAAATGGAAGTGAATCAAATCACACTTTGCCTCACTCTGCAACAAGAGCAGCTATGTTGGTGAGAATCAACACTCTTCTTCAAGGGTATTCTGGCATTCGATTCGAGATTTTGGAAGCCATTACTAATCTCTTGAACCACAACGTCACTCCATGTTTGCCACTTAGAGGAACAATTACTGCTTCGGGAGATTTGGTTCCTTTGTCTTATATTGCAGGGTTGCTTACCGGTCGTCACAATTCAAAAGCTATTGGACCTAATGGAGAAATCCTTGATGCAAAGGTTGCTTTTGAACAAGCTGGTATTGATTCTGGGTTCTTTGAGTTGCAGCCTAAGGAAGGTCTTGCTCTTGTTAATGGCACTGCTGTCGGTTCTGGGTTGGCTTCCATTGTTCTCTTTGAGGCAAATATTTTAGTTGTTTTGTCTGAAATTTTATCTGCAATATTTGCTGAGGTGATGCAAGGAAAGCCTGAATTCACCGATCATTTGACCCATAAGTTGAAGCACCACCCTGGTCAAATTGAAGCAGCTGCAATCATGGAGCACATTTTAGATGGAAGCTCCTACATGAAAACGGCAAAGAAATTACATGAAATGGATCCTCTCCAAAAGCCCAAACAAGATCGTTACGCTCTTAGAACTTCTCCTCAATGGTTGGGTCCTTTGATTGAAGTGATTCGTTTCTCCACCAAGTCAATTGAGCGGGAAATTAATTCAGTCAATGACAACCCTTTGATTGATGTTTCAAGAAACAAGGCGCTACATGGAGGTAACTTCCAAGGAACGCCGATTGGAGTTTCTATGGACAACACTCGTTTGGCCGTTGCATCCATTGGAAAGCTAATGTTTGCTCAATTTTCAGAATTAGTCAATGATTTTTACAATAACGGTTTGCCTTCTAACCTTTCTGCAAGTCGAAATCCAAGCTTGGATTATGGCTTTAAAGGTGCTGAAATTGCCATGGCTTCTTATTGCTCTGAGCTTCAATATCTTGCAAATCCTGTCACAAGTCACGTCCAAAGCGCCGAGCAACACAACCAAGATGTTAACTCTCTTGGTTTAATTTCCTCAAGGAAAACAGCTGAAGCCATCGATATTCTTAAACTCATGTCTTCCACATTCTTAGTTGCTTTATGTCAAGCAATTGACTTGAGGCATTTGGAGGAAAACTTGAAGAGCGCGGTGAAAAGCACAGTTAGCCAAGTAGCAAAAAAAGTGTTGACTACCTCTTCCAATGGCGCACTTCATCCTTCAAGATTTTGTGAGAAAGATTTACTCAAAGTTGTTGATAGGGAATACACATTTGCATACATTGATGATCCATGCAGTGCCACCTACCCACTTATGCAAAAGCTAAGGCAAATTATTGTTGAGCATGCACTTAAAAACGGCGATAACGAAACAAACGAAAACACCTCAATCTTCCAAAAGATTGGTGCTTTCGAAGAGGAGTTGAAGGCAATCTTACCAAAGGAGGTTGAAAACGTAAGGTTAGCATATGAGAATGGAAACTCTAAAATTGAAAATCAAATCAAGGATTGTAGATCTTACCCATTATACAAATTTGTGAGAGAGGAGTTGGGAACAAGATTGCTAACTGGCGAAAGGGTAATTTCTCCCGGAGAAGAGTGCGAGAAGGTATTCACCGCTTTAAGTCAAGGAAAGATGATTGACTCTATCTTCGAATGCTTGAAAGAGTGGGATGGAACACCAATTCCTATTTGTTAA 2142 42.11 MAQKVNANQNGSMESLCSSHQDPLNWGLAADSMKGSHLDEVKRMVEEYRRPLVKLGGQTLTISQVAAIATRDNDVLVELAESARAGVKASSDWVMESMGKGTDSYGVTTGFGATSHRRTNQGGALQKELIRFLNSGIFGNGSESNHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITNLLNHNVTPCLPLRGTITASGDLVPLSYIAGLLTGRHNSKAIGPNGEILDAKVAFEQAGIDSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILVVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKKLHEMDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAVASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKSAVKSTVSQVAKKVLTTSSNGALHPSRFCEKDLLKVVDREYTFAYIDDPCSATYPLMQKLRQIIVEHALKNGDNETNENTSIFQKIGAFEEELKAILPKEVENVRLAYENGNSKIENQIKDCRSYPLYKFVREELGTRLLTGERVISPGEECEKVFTALSQGKMIDSIFECLKEWDGTPIPIC* 714
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1387653 1390118 + CsaV3_4G002320.1 Csa04g00232 525842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00232 713 CDD PAL-HAL 58 523 IPR001106 -
Csa04g00232 713 Gene3D - 14 259 IPR024083 -
Csa04g00232 713 PANTHER HISTIDINE AMMONIA-LYASE 14 713 IPR001106 -
Csa04g00232 713 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 14 713 - -
Csa04g00232 713 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 22 703 IPR005922 GO:0005737|GO:0006559|GO:0016841
Csa04g00232 713 Pfam Aromatic amino acid lyase 60 535 IPR001106 -
Csa04g00232 713 SUPERFAMILY L-aspartase-like 22 713 IPR008948 GO:0003824
Csa04g00232 713 Gene3D - 526 647 IPR023144 -
Csa04g00232 713 Gene3D Fumarase/aspartase (Central domain) 260 707 - -
Csa04g00232 713 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 195 211 IPR022313 GO:0016841
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00229 Csa-Chr4:1378889 Csa04g00232 Csa-Chr4:1387653 0 dispersed
Csa04g00230 Csa-Chr4:1379904 Csa04g00232 Csa-Chr4:1387653 0 dispersed
Csa04g00232 Csa-Chr4:1387653 Csa06g02584 Csa-Chr6:22823980 0 dispersed
Csa04g00231 Csa-Chr4:1382724 Csa04g00232 Csa-Chr4:1387653 0 tandem
Csa04g00232 Csa-Chr4:1387653 Csa04g00233 Csa-Chr4:1392661 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00232 K10775 - csv:116401606 1404.81