Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00260 ATGGCCGGAACATCCGAAGATCCTAAACCCACTGAATCTCATCCCTCCCCTGCACCGCCGCCGTCGACGGAGGACGAATCAAAGAAATGGGGAACACACGTCATGGGACCACCAGCAGCCCCCACCGAACATCCGGATAACCAGAAGGCAGCGTTCTGGAACGCCGCCTCTCAGCAGCAGATTCACCACCATCCGTACGTTCAGTACTCTCCGGTGGATCATCGGCCAAGTTCCAACCCGTTGGAGCCCGTGGTACACGCCTTCAATTCCTGGAGCAACAAAGCAGAGACGTTCGCGCGTAACATTTGGCACAATCTGAGGACTGGGCAGTCGATGTCGGAAGCGGCTTGGGGGAAAGTGAATTTGACGGCGAAGGCTATAACGGAAGGGGGATTTGAGTCTTTGTTTAAGCAGACGTTCGCGACGGAGGTGAATGAGAAATTGATGAAAAGCTTTGCTTGCTATCTCTCCACCGCGACGGGTCCGGTGGCCGGAACCTTGTATTTGTCGACGGTGCGTGTGGCGTTTTGTAGCGATCGCCCACTTTACTTCACTGCCCCCTCTGGTCAACCGTCTTGGAGCTACTACAAGGTAATGATACCATTGTCGCATATAGCGATAGTGAATCCGGTGACAATGCCGGGGAACCCATCGGCGAGGTACCTTCAGGTCACCACCGTGGATGGCCATGAATTTTGGTTTATGGGTTTCGTGAACTTCGAGAAGGCAACCCACAACCTCTTAAAAGCCGTCTCCGCTCATAATTCTCCTCCCTCCGCTGTCTGA 786 54.2 MAGTSEDPKPTESHPSPAPPPSTEDESKKWGTHVMGPPAAPTEHPDNQKAAFWNAASQQQIHHHPYVQYSPVDHRPSSNPLEPVVHAFNSWSNKAETFARNIWHNLRTGQSMSEAAWGKVNLTAKAITEGGFESLFKQTFATEVNEKLMKSFACYLSTATGPVAGTLYLSTVRVAFCSDRPLYFTAPSGQPSWSYYKVMIPLSHIAIVNPVTMPGNPSARYLQVTTVDGHEFWFMGFVNFEKATHNLLKAVSAHNSPPSAV* 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1608365 1609831 + CsaV3_4G002600.1 Csa04g00260 525870

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00260 261 MobiDBLite consensus disorder prediction 1 46 - -
Csa04g00260 261 Gene3D - 132 252 IPR011993 -
Csa04g00260 261 CDD PH-GRAM_GEM 145 251 - -
Csa04g00260 261 PANTHER GEM-LIKE PROTEIN 5 14 257 - -
Csa04g00260 261 Pfam GRAM domain 135 255 IPR004182 -
Csa04g00260 261 PANTHER GEM-LIKE PROTEIN 2 14 257 IPR037848 -
Csa04g00260 261 SMART gram2001c 134 212 IPR004182 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00260 - - - csv:101221731 528.865
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00260 Csa-Chr4:1608365 Csa06g03129 Csa-Chr6:26725973 3.74E-53 dispersed
Csa05g02088 Csa-Chr5:24167510 Csa04g00260 Csa-Chr4:1608365 8.35E-37 dispersed
Csa04g00260 Csa-Chr4:1608365 Csa02g02186 Csa-Chr2:19661252 1.61E-55 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1330 . . . Bda11g00376 Bpe13g00825 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00260 . . Blo02g00203 . . Bda11g00376 Bpe14g00808 . . Bma06g01332 . . . . . . . . Cpe03g01197 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005307 2 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 1 1 3 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g00260 Csa_Chr04 FPKM 21.354166 20.540316 30.038553 25.948051 32.76548 28.930294 35.225861 23.791208 27.537342 22.100945