Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00280 ATGATTGCCAGCTCTCTCTGCAATGCTTCCGCTAAATTCCCGGCAGAGGTGATGGAGGTTGAAACGATGATGGAACAGAAGAGGACTCTATGCTCGGTTGATGAGAGCGCTCTTACTTCACTTACACCCAAACGGCACAAGACTGATTTCTCTATCTCCTCTAAGGAGAGGAAAGACAAACTGGGTGAACGAATTATGGCCTTGCAACAACTTGTTTCACCATACGGAAAGACAGATACGGCATCTGTTCTTCTGGAAGCAATGGAATATATCCAATTCCTTCACGAGCAAGTCAAGGTGTTGAGTGCACCATATCTCCAAAGCACACCCACTGTTTTGTTGCAGGAGGTGGAGCCATGCAGCCACAGCCTGAGGAGCAGAGGCCTTTGTCTTGTTCCAATCTCGTGTACTGCTGGAGTTGCACGGAGCAACGGTGCAGATATTTGGGCTCCTGTGAAGACAATTTCTCCCAAATTTGAGAAGCACATCTCACCATTCAATTGA 504 47.42 MIASSLCNASAKFPAEVMEVETMMEQKRTLCSVDESALTSLTPKRHKTDFSISSKERKDKLGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISCTAGVARSNGADIWAPVKTISPKFEKHISPFN* 168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1745825 1749669 + CsaV3_4G002800.1 Csa04g00280 525890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00280 167 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 45 94 IPR011598 GO:0046983
Csa04g00280 167 SMART finulus 53 100 IPR011598 GO:0046983
Csa04g00280 167 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 47 108 IPR036638 GO:0046983
Csa04g00280 167 PANTHER TRANSCRIPTION FACTOR BHLH113-LIKE ISOFORM X1 17 151 - -
Csa04g00280 167 CDD bHLH_AtbHLH_like 51 102 IPR045239 -
Csa04g00280 167 Gene3D - 42 111 IPR036638 GO:0046983
Csa04g00280 167 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 17 151 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00280 Csa-Chr4:1745825 Csa07g00710 Csa-Chr7:5057906 4.54E-35 dispersed
Csa04g00280 Csa-Chr4:1745825 Csa06g03565 Csa-Chr6:28902722 1.21E-32 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00280 - - csv:101218499 330.872