Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00292 ATGGAAGCTTGCAGGCAGCAGTGTGAAGAAGCTATGGAGTCGAAGATCAATCCCAACTTCAACTCTCTTACTCTTCTCCACAACGCTCTCATCATCACCATGGATTCCCACAGTCGAGTCTTCCGCAACGGCGGAATTGTTATCTCCGGTGACAAAATCAAGGCCATCGGTCACTCTTCCGAAATTCTCCACCAATTCTCTGCTTCTGCTCACCATATTATTGATCTTCACTCTCAAATCTTGCTCCCGGGGTTTATTAACACGCATGTCCACACTTCTCAGCAGCTGGCGAGAAGCATAGCCGACGATGTGGATTTGATGACTTGGTTGCACCATCGTATTTGGCCCTACGAATCCAACATGACTGAGGAAGATTCCTACATTTCCACTTTACTTTGTGGTATTGAACTCATTCATTCGGGCGTAACATGCTTCGCTGAGGCAGGGGGTCAACATGTATCTGGAATGGCTAAGGCTGTAGAGTTGCTGGGTTTACGGGCGTGCTTAACTCAGTCAATAATGGACTGTGGGGAAGGGTTGCCAGCTCCTTGGGCTGCTGTAACAACTGATGATTGCATTCAGTCTCAAAAGGAGCTTTACAAGAAGCACCATAACACAGCAGATGGGCGCATCAGAATATGGTTTGGTATCAGACAAATTATGAATGCAACAGACCGTCTATTGATTGAAACAAGGGATAATGCATTAGAACTTGAAACCGGGATCCACATGCATGTTGCAGAAATAGCCTATGAGAACCAGAAAGTGATAAATGAACGAAAAGTTGATCATGGAACAGTTACGTACTTGGAGAAAATACAGTTTCTGGGAAACAATTTACTTTCTGCACATACTGTTTGGGTCAATGACAATGAGATTAGTTTTCTTTCAAGGAATGGGGTCAAAGTATCCCACTGTCCAGCTTCTGCAATGAGAATGCTTGGTTTTGCACCTATCAGAGAGATGCTTGATGCTGGTATTTGTGTTTCCATTGGAACAGATGGAGCACCGTCAAATAATCGAATGAGCATAGTTGATGAGATGTACCTTGCATCGCTGATTAATAAAGGCCGGGAAGTTTATGCAAATGGAACAACCAATCCCTCTGTTCTTCCTGCTGAAGTAGTCCTACAAATGGTGACAATAAATGGCGCAAAATCAGTACTTTGGGATAATGAAATAGGATCACTTGAAGTTGGGAAGAAGGCGGATATGGTTGTGATCAACCCTTCCTCTTGGTCCATGGTTCCTTCCCACGACAGCATTTCCTGCATCGTCTACAGTATGAGAACTGAAAATGTCATCTCTGTAATGTGTAATGGGCAGTGGATAATGAAAGATAAGAAGATCATTAATGTGAATGAGGAAGATGTAATTGTGATGGCAAAACAAGCTTCCAGGGAACTGCTTGAGAGAGCAGGAATAAGAATTCCGAACAGAATGAATTTCATCTAA 1455 43.37 MEACRQQCEEAMESKINPNFNSLTLLHNALIITMDSHSRVFRNGGIVISGDKIKAIGHSSEILHQFSASAHHIIDLHSQILLPGFINTHVHTSQQLARSIADDVDLMTWLHHRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHVSGMAKAVELLGLRACLTQSIMDCGEGLPAPWAAVTTDDCIQSQKELYKKHHNTADGRIRIWFGIRQIMNATDRLLIETRDNALELETGIHMHVAEIAYENQKVINERKVDHGTVTYLEKIQFLGNNLLSAHTVWVNDNEISFLSRNGVKVSHCPASAMRMLGFAPIREMLDAGICVSIGTDGAPSNNRMSIVDEMYLASLINKGREVYANGTTNPSVLPAEVVLQMVTINGAKSVLWDNEIGSLEVGKKADMVVINPSSWSMVPSHDSISCIVYSMRTENVISVMCNGQWIMKDKKIINVNEEDVIVMAKQASRELLERAGIRIPNRMNFI* 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1818065 1827873 + CsaV3_4G002920.1 Csa04g00292 525902

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00292 484 CDD ATZ_TRZ_like 24 450 - -
Csa04g00292 484 Pfam Amidohydrolase family 80 443 IPR006680 GO:0016787
Csa04g00292 484 SUPERFAMILY Metallo-dependent hydrolases 83 396 IPR032466 -
Csa04g00292 484 PANTHER AMINOHYDROLASE SSNA-RELATED 21 483 - -
Csa04g00292 484 SUPERFAMILY Composite domain of metallo-dependent hydrolases 24 470 IPR011059 GO:0016810
Csa04g00292 484 Gene3D Urease, subunit C, domain 1 25 459 IPR011059 GO:0016810
Csa04g00292 484 Gene3D - 84 388 - -
Csa04g00292 484 PANTHER AMINOHYDROLASE SSNA-RELATED 21 483 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00292 - - - csv:101216449 973.77
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1308 . . . Bda11g00382 Bpe13g00820 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00292 . . . . . Bda11g00382 . . . Bma06g01337 . . . . . . . . Cpe03g01215 . . . . . . . . . . . . . . . . Chy07g01487 Cme07g01925
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009548 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g00292 Csa_Chr04 FPKM 306.629089 307.801514 1.401684 2.020674 5.138822 4.215438 4.246205 0.080237 0.0 0.0