Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00293 ATGGAGAAAAACCCACCCCCAGAAAAGTCTGATAGTTTTTCTAAAAATTTCAATAGAAGAATTGCTAATTTGGGCTCACCTCGTCGCACTCCTGACGCCACCCCCGTCGCTGCTGATGCAAGTTCCGAAAAGCTTGCTGCAGATAGAGATGATGATGCCTTCATTGAAGACCCTCCTTCAGAATCTGATACCCTATTGATTTTCGAAGAGGTTGATCAATTCCTTGAGACTTTGTACAATGTTGGAGATGATGGATCGAATGTAGTCCATGAAATTCCGAGTTCGGTTCATTCCTTGTCCAAAATGGTGGATTCCATGATCTCTAGATACAGTTCTAATAAATATCCGGCGAAGCTTGGTAAAGATCCCGACAGGGATTCTTGCTTTTTCGAAGCATTAGGTCGGATTGCCAAGATTGCGATTAAATTAAGTGAATTCCCTACCAGCACTGCTTCCATTCCTTCTCTAAATCGGACCACCACGGCTGTACAGCGAGCGATGTCGTTATTGGATGAAGAATTCAGTACCCTTTTAAAAGAATGCAAATATCGGGAGCTTGATTCTAAATCGGACAAGAAAGCATCTAAGCAATCGTCGTTCAAAGCAATCAACGAATCAACAGATCAACAAAACAGCACTGTATCTGAATCATCTGAGCCTGATTCTGCCAGGGAAGAGATGTTCCCCTCTTTTTCGCACGACACTGTATCGTACATGAAAAGAATTGCCGGAACAATGATCACTGCCGGCTACGAGAAGGAATGTTGTATGAGTTACAGCTTCCTACGGCAGAGCTCGTTCAAAGGAATATTGAACCAGCTTGGGTATGAAAATATTAGCATAGACGAGATTCAAAAAATGCAATGGGAAACACTTCAAACGGAAATCGACAAATGGATCGCCGTCGTAAAGAAATGCTCAAAATCTCTGTTCCCAGGTGAGTGGAGGCTTTGTGACTCTGTTTTCACCGATCATCCCTTCATTTCTCATACGTTATTCAGCAATTTAACAAGAGCAGTAGTCATCAAGCTTCTCAACTTTGCAAACGCCGTCGTTTTAACAAAACGATCGGCGGAGAAGATGTTCAAATTACTTGACATGTACGAAACCATCCGCGATTTAGTTCCGACGATCAATGGCTTCCCTGAAAATTGCAGAACAGAGCTAATTACCGAAGCGGAAGGGACAAAAAACGGGATAGGCGAAGCAATAGTCGGCATTTTCTACGACCTAGAGAACTCAATCAAAAGTGACAACGCGAAAATTCCAGTTCCAGGAGGAGCAGTTCATCCATTAACACGCTACATAATGAATTACCTAAAATACGCTTGCGAGTACAAAGAAACCCTAGAACAGGTGTTCCAATTTCTCGACCCTAAAGTCGAAGAAGACCGACCATCAAGAATGGACGAGAACGACGACGCATCACCGAGAAAATCTCAACTCGCAATTCAGATCGCAATGGTAATGGAACTACTCGACGCAAATCTGACAATGAGATCAAAACTATACCGCGACGCATCTCTTCGGTACATTTTCCTGATGAACAACGGAAGATACATAGTACAGAAAATCAAAGGGTCATGTGGAATTACGGAGTTGATGGGGGACCGTTGGTGCAGGAAACGATCGACGAATCTGCGACAATACCATAAAAATTACCAGAGAGAAACATGGAGTAAGGTGTTGCAGTGTTTAAACCACGAAGGATTGCTGGTGAACGGGAAAGTATCAAAGCCGATATTGAAGGAGAGATTCAAAAGCTTTAACGCCATGTTCGATGAAATACACAAAACGCAAAGCAGTTGGGTGGTAAGTGACGAGCAGCTTCAATCGGAGCTTAGGATATCAGTGTCGGCGGTGATGATTCCAGCGTACCGTTCGTTCGTAGGGAGATTCAAGCAGCATTTTGATGCGGGAAGACAATCGGAGAAATACATAAAGTATCAACCTGAAGACATTGAAGGTTTGATTGATGATCTGTTTGATGGAAACACTGCGTCTATGGGAAGAAGAAGAATGTAA 2025 43.06 MEKNPPPEKSDSFSKNFNRRIANLGSPRRTPDATPVAADASSEKLAADRDDDAFIEDPPSESDTLLIFEEVDQFLETLYNVGDDGSNVVHEIPSSVHSLSKMVDSMISRYSSNKYPAKLGKDPDRDSCFFEALGRIAKIAIKLSEFPTSTASIPSLNRTTTAVQRAMSLLDEEFSTLLKECKYRELDSKSDKKASKQSSFKAINESTDQQNSTVSESSEPDSAREEMFPSFSHDTVSYMKRIAGTMITAGYEKECCMSYSFLRQSSFKGILNQLGYENISIDEIQKMQWETLQTEIDKWIAVVKKCSKSLFPGEWRLCDSVFTDHPFISHTLFSNLTRAVVIKLLNFANAVVLTKRSAEKMFKLLDMYETIRDLVPTINGFPENCRTELITEAEGTKNGIGEAIVGIFYDLENSIKSDNAKIPVPGGAVHPLTRYIMNYLKYACEYKETLEQVFQFLDPKVEEDRPSRMDENDDASPRKSQLAIQIAMVMELLDANLTMRSKLYRDASLRYIFLMNNGRYIVQKIKGSCGITELMGDRWCRKRSTNLRQYHKNYQRETWSKVLQCLNHEGLLVNGKVSKPILKERFKSFNAMFDEIHKTQSSWVVSDEQLQSELRISVSAVMIPAYRSFVGRFKQHFDAGRQSEKYIKYQPEDIEGLIDDLFDGNTASMGRRRM* 675
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1818166 1820190 - CsaV3_4G002930.1 Csa04g00293 525903

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00293 674 Gene3D Exocyst complex component Exo70 112 672 - -
Csa04g00293 674 SUPERFAMILY Cullin repeat-like 125 663 IPR016159 -
Csa04g00293 674 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 60 673 - -
Csa04g00293 674 MobiDBLite consensus disorder prediction 1 15 - -
Csa04g00293 674 MobiDBLite consensus disorder prediction 1 59 - -
Csa04g00293 674 MobiDBLite consensus disorder prediction 197 226 - -
Csa04g00293 674 MobiDBLite consensus disorder prediction 199 218 - -
Csa04g00293 674 Pfam Exo70 exocyst complex subunit 298 660 IPR046364 GO:0000145|GO:0005546|GO:0006887
Csa04g00293 674 PANTHER EXOCYST COMPLEX PROTEIN EXO70 60 673 IPR004140 GO:0000145|GO:0006887
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00293 K07195 EXOC7, EXO70; exocyst complex component 7 - csv:101220402 1330.85
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00293 Csa-Chr4:1818166 Csa05g01620 Csa-Chr5:19199254 0 dispersed
Csa04g00293 Csa-Chr4:1818166 Csa01g02355 Csa-Chr1:20716420 6.57E-77 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1307 . . . . . . . Bma15g00313 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00293 . . Blo06g00756 Blo12g00287 . . . . . . . . . . . . . . Cpe03g01216 . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa05g02705 . 14 652 EXO70 exocyst subunit family AT5G03540 76.7 1.0e-285 979.2
Csa06g02721 . 1 639 EXO70 exocyst subunit family AT5G03540 70.7 6.0e-265 910.2
Csa06g02723 . 1 421 EXO70 exocyst subunit family AT5G03540 68.9 8.8e-168 587.4
Csa06g02722 CCT 1 182 EXO70 exocyst subunit family AT5G03540 74.7 5.3e-72 269.2
Csa06g02721 . 1 639 EXO70 exocyst subunit family AT5G52340 79.8 1.9e-297 1018.1
Csa05g02705 . 16 652 EXO70 exocyst subunit family AT5G52340 74.4 1.1e-271 932.6
Csa06g02723 . 1 421 EXO70 exocyst subunit family AT5G52340 77.9 2.8e-187 652.1
Csa06g02722 CCT 1 182 EXO70 exocyst subunit family AT5G52340 80.2 7.8e-81 298.5
Csa06g02721 . 145 631 EXO70 exocyst subunit family AT5G52350 63.5 1.7e-175 612.8
Csa05g02705 . 151 652 EXO70 exocyst subunit family AT5G52350 60.6 5.4e-169 591.3
Csa06g02723 . 145 421 EXO70 exocyst subunit family AT5G52350 60.1 1.2e-88 324.3
Csa06g02722 CCT 1 182 EXO70 exocyst subunit family AT5G52350 64.3 2.0e-62 237.3
Csa01g02542 . 1 630 EXO70 exocyst subunit family AT5G58430 66.5 7.6e-246 846.7
Csa01g02542 . 1 629 EXO70 exocyst subunit family AT1G07000 52.0 2.3e-175 612.5
Csa04g00293 . 60 673 EXO70 exocyst subunit family AT5G13150 52.6 3.1e-173 605.5
Csa05g01620 . 93 705 EXO70 exocyst subunit family AT5G13990 54.3 4.1e-192 668.3
Csa03g02774 . 12 611 EXO70 exocyst subunit family AT1G72470 64.3 1.3e-213 739.6
Csa03g02774 . 9 607 EXO70 exocyst subunit family AT1G54090 62.3 3.9e-210 728.0
Csa03g02774 . 9 608 EXO70 exocyst subunit family AT3G14090 65.1 8.4e-221 763.5
Csa01g03408 . 14 651 EXO70 exocyst subunit family AT5G50380 61.9 5.6e-226 780.8
Csa01g00963 . 1 635 EXO70 exocyst subunit family AT5G50380 61.8 3.1e-224 775.0
Csa02g02314 . 13 683 EXO70 exocyst subunit family AT4G31540 73.1 4.5e-292 1000.3
Csa05g00661 . 58 601 EXO70 exocyst subunit family AT3G55150 51.7 2.2e-152 536.2
Csa05g00661 . 27 601 EXO70 exocyst subunit family AT2G39380 52.0 3.9e-157 552.0
Csa03g03213 . 27 632 EXO70 exocyst subunit family AT3G09520 54.3 4.0e-178 621.7
Csa06g01715 . 36 613 EXO70 exocyst subunit family AT5G59730 50.2 5.9e-153 538.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005149 2 1 3 3 3 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g00293 Csa_Chr04 FPKM 6.988006 8.214927 68.081497 71.779053 208.083939 236.48526 208.732986 1.188851 0.900964 0.477953