Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00293 ATGGAGAAAAACCCACCCCCAGAAAAGTCTGATAGTTTTTCTAAAAATTTCAATAGAAGAATTGCTAATTTGGGCTCACCTCGTCGCACTCCTGACGCCACCCCCGTCGCTGCTGATGCAAGTTCCGAAAAGCTTGCTGCAGATAGAGATGATGATGCCTTCATTGAAGACCCTCCTTCAGAATCTGATACCCTATTGATTTTCGAAGAGGTTGATCAATTCCTTGAGACTTTGTACAATGTTGGAGATGATGGATCGAATGTAGTCCATGAAATTCCGAGTTCGGTTCATTCCTTGTCCAAAATGGTGGATTCCATGATCTCTAGATACAGTTCTAATAAATATCCGGCGAAGCTTGGTAAAGATCCCGACAGGGATTCTTGCTTTTTCGAAGCATTAGGTCGGATTGCCAAGATTGCGATTAAATTAAGTGAATTCCCTACCAGCACTGCTTCCATTCCTTCTCTAAATCGGACCACCACGGCTGTACAGCGAGCGATGTCGTTATTGGATGAAGAATTCAGTACCCTTTTAAAAGAATGCAAATATCGGGAGCTTGATTCTAAATCGGACAAGAAAGCATCTAAGCAATCGTCGTTCAAAGCAATCAACGAATCAACAGATCAACAAAACAGCACTGTATCTGAATCATCTGAGCCTGATTCTGCCAGGGAAGAGATGTTCCCCTCTTTTTCGCACGACACTGTATCGTACATGAAAAGAATTGCCGGAACAATGATCACTGCCGGCTACGAGAAGGAATGTTGTATGAGTTACAGCTTCCTACGGCAGAGCTCGTTCAAAGGAATATTGAACCAGCTTGGGTATGAAAATATTAGCATAGACGAGATTCAAAAAATGCAATGGGAAACACTTCAAACGGAAATCGACAAATGGATCGCCGTCGTAAAGAAATGCTCAAAATCTCTGTTCCCAGGTGAGTGGAGGCTTTGTGACTCTGTTTTCACCGATCATCCCTTCATTTCTCATACGTTATTCAGCAATTTAACAAGAGCAGTAGTCATCAAGCTTCTCAACTTTGCAAACGCCGTCGTTTTAACAAAACGATCGGCGGAGAAGATGTTCAAATTACTTGACATGTACGAAACCATCCGCGATTTAGTTCCGACGATCAATGGCTTCCCTGAAAATTGCAGAACAGAGCTAATTACCGAAGCGGAAGGGACAAAAAACGGGATAGGCGAAGCAATAGTCGGCATTTTCTACGACCTAGAGAACTCAATCAAAAGTGACAACGCGAAAATTCCAGTTCCAGGAGGAGCAGTTCATCCATTAACACGCTACATAATGAATTACCTAAAATACGCTTGCGAGTACAAAGAAACCCTAGAACAGGTGTTCCAATTTCTCGACCCTAAAGTCGAAGAAGACCGACCATCAAGAATGGACGAGAACGACGACGCATCACCGAGAAAATCTCAACTCGCAATTCAGATCGCAATGGTAATGGAACTACTCGACGCAAATCTGACAATGAGATCAAAACTATACCGCGACGCATCTCTTCGGTACATTTTCCTGATGAACAACGGAAGATACATAGTACAGAAAATCAAAGGGTCATGTGGAATTACGGAGTTGATGGGGGACCGTTGGTGCAGGAAACGATCGACGAATCTGCGACAATACCATAAAAATTACCAGAGAGAAACATGGAGTAAGGTGTTGCAGTGTTTAAACCACGAAGGATTGCTGGTGAACGGGAAAGTATCAAAGCCGATATTGAAGGAGAGATTCAAAAGCTTTAACGCCATGTTCGATGAAATACACAAAACGCAAAGCAGTTGGGTGGTAAGTGACGAGCAGCTTCAATCGGAGCTTAGGATATCAGTGTCGGCGGTGATGATTCCAGCGTACCGTTCGTTCGTAGGGAGATTCAAGCAGCATTTTGATGCGGGAAGACAATCGGAGAAATACATAAAGTATCAACCTGAAGACATTGAAGGTTTGATTGATGATCTGTTTGATGGAAACACTGCGTCTATGGGAAGAAGAAGAATGTAA 2025 43.06 MEKNPPPEKSDSFSKNFNRRIANLGSPRRTPDATPVAADASSEKLAADRDDDAFIEDPPSESDTLLIFEEVDQFLETLYNVGDDGSNVVHEIPSSVHSLSKMVDSMISRYSSNKYPAKLGKDPDRDSCFFEALGRIAKIAIKLSEFPTSTASIPSLNRTTTAVQRAMSLLDEEFSTLLKECKYRELDSKSDKKASKQSSFKAINESTDQQNSTVSESSEPDSAREEMFPSFSHDTVSYMKRIAGTMITAGYEKECCMSYSFLRQSSFKGILNQLGYENISIDEIQKMQWETLQTEIDKWIAVVKKCSKSLFPGEWRLCDSVFTDHPFISHTLFSNLTRAVVIKLLNFANAVVLTKRSAEKMFKLLDMYETIRDLVPTINGFPENCRTELITEAEGTKNGIGEAIVGIFYDLENSIKSDNAKIPVPGGAVHPLTRYIMNYLKYACEYKETLEQVFQFLDPKVEEDRPSRMDENDDASPRKSQLAIQIAMVMELLDANLTMRSKLYRDASLRYIFLMNNGRYIVQKIKGSCGITELMGDRWCRKRSTNLRQYHKNYQRETWSKVLQCLNHEGLLVNGKVSKPILKERFKSFNAMFDEIHKTQSSWVVSDEQLQSELRISVSAVMIPAYRSFVGRFKQHFDAGRQSEKYIKYQPEDIEGLIDDLFDGNTASMGRRRM* 675
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1818166 1820190 - CsaV3_4G002930.1 Csa04g00293 525903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00293 674 Gene3D Exocyst complex component Exo70 112 672 - -
Csa04g00293 674 SUPERFAMILY Cullin repeat-like 125 663 IPR016159 -
Csa04g00293 674 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 60 673 - -
Csa04g00293 674 MobiDBLite consensus disorder prediction 1 15 - -
Csa04g00293 674 MobiDBLite consensus disorder prediction 1 59 - -
Csa04g00293 674 MobiDBLite consensus disorder prediction 197 226 - -
Csa04g00293 674 MobiDBLite consensus disorder prediction 199 218 - -
Csa04g00293 674 Pfam Exo70 exocyst complex subunit 298 660 IPR046364 GO:0000145|GO:0005546|GO:0006887
Csa04g00293 674 PANTHER EXOCYST COMPLEX PROTEIN EXO70 60 673 IPR004140 GO:0000145|GO:0006887
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00293 Csa-Chr4:1818166 Csa05g01620 Csa-Chr5:19199254 0 dispersed
Csa04g00293 Csa-Chr4:1818166 Csa01g02355 Csa-Chr1:20716420 6.57E-77 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00293 K07195 - csv:101220402 1330.85