Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00296 ATGAAAATAATATTTGGATCCGTCCATAACTCTTCCGCCAGCTCAAGAGCCGCCTCCACCCAACCAACTTGCTACGCGGATATACAACAAACACAAAACAACTCTCTTCTCTCATCTCACACACACACAAAATTCTCACAAATCTCATCGCCAAGCACAAATTTCTCACAATTACAACAACAATCAAATTCCTCACAAACCCACTTTCTTCTTCTTCCTCCTCCTTCACTTTCCCCCATGGATTCTTGGGCTTCTCTTCCAGTTCACGATGAGTATCAAAAGCTCGTCATTAGAATGAACCCCCCAAGGGTGTCTATTGATAATACCTCGAGCAGGAAGGCCACTTTGATTAAGGTTGATAGTTCTAACAGGCATGGTAGTTTGCTGGAGGTGGTTCAAGTCCTTACTGATTTGAATCTTATAATTCGTCGAGCTTACATTTCTTCAGATGGTGAATGGTTCATGGACGTTTTTCATGTCACTGATCAGAATGGGAAAAAACTTTGTGATGATGGTGTGGGTGAGAGAATTCAACAGTCACTGGGGCCAAGGGCACGCAGTTTCAGATCATTGAGGAGGTCGGTAGGTGTCCAAGCTGCTGCTGAACACACAACGATTGAATTGTCTGGAAGAGACAGGCCAGGCTTGCTTTCTGAGGTTTTTGCTGTTCTTACAGATCTCAAATGTAATGTGGTAGCTGCAGAGGTTTGGACCCATAATTCAAGAATGGCTTCAGTTGTTTACATCACCGATGACACGAGTGGAATGCCGATCGATGACCCCGATTGGTTGGCTAAGATTAAACAGCTTCTCCTCTATGTTCTTAAAGGAGACAGAGATAAACACAGTGCCAATACTGCTGTTTCAATGAACTCTACTCATAAAGAGCGGAGGCTGCATCAAATGATGTATGCAGACCGTGATTTCGACTTGAATTACACGAGTTGCAGCGAAAGCTACCAGAGCAGGCCCCTTGTGACTGTAGAGAACTGTGTTGAGAAGGGATATACCGTTGTCAACCTTAGATGTCCTGACCGACCCAAGCTACTTTTTGATACGGTTTGCACCCTGACCGATATGCAATATGTGGTGTACCATGCAACCATCATTGCTGAAGAGCCTGAGGCTTATCAGGCATGTAGATGGAAGCCCTATTAG 1158 44.47 MKIIFGSVHNSSASSRAASTQPTCYADIQQTQNNSLLSSHTHTKFSQISSPSTNFSQLQQQSNSSQTHFLLLPPPSLSPMDSWASLPVHDEYQKLVIRMNPPRVSIDNTSSRKATLIKVDSSNRHGSLLEVVQVLTDLNLIIRRAYISSDGEWFMDVFHVTDQNGKKLCDDGVGERIQQSLGPRARSFRSLRRSVGVQAAAEHTTIELSGRDRPGLLSEVFAVLTDLKCNVVAAEVWTHNSRMASVVYITDDTSGMPIDDPDWLAKIKQLLLYVLKGDRDKHSANTAVSMNSTHKERRLHQMMYADRDFDLNYTSCSESYQSRPLVTVENCVEKGYTVVNLRCPDRPKLLFDTVCTLTDMQYVVYHATIIAEEPEAYQACRWKPY* 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1836767 1839989 - CsaV3_4G002960.1 Csa04g00296 525906

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00296 385 SUPERFAMILY ACT-like 202 269 IPR045865 -
Csa04g00296 385 Gene3D - 199 271 - -
Csa04g00296 385 SUPERFAMILY ACT-like 112 184 IPR045865 -
Csa04g00296 385 Pfam ACT domain 204 253 IPR002912 -
Csa04g00296 385 Pfam ACT domain 116 164 IPR002912 -
Csa04g00296 385 ProSiteProfiles ACT domain profile. 116 196 IPR002912 -
Csa04g00296 385 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 81 379 IPR040217 -
Csa04g00296 385 ProSiteProfiles ACT domain profile. 205 282 IPR002912 -
Csa04g00296 385 PANTHER OS08G0515400 PROTEIN 81 379 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00296 - - - csv:101215960 603.594
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00296 Csa-Chr4:1836767 Csa06g00800 Csa-Chr6:6435164 1.97E-09 dispersed
Csa04g00296 Csa-Chr4:1836767 Csa03g00331 Csa-Chr3:2758610 8.59E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1301 . . . . . . . . . . . . . . . . . . . . . . . . Cla06g00179 Cam06g0032 Cec06g0198 Cco06g0193 Clacu06g0195 Cmu06g0189 Cre06g0961 . . . . . Csa04g00296 Chy11g01810 Cme11g02343 . Blo12g00284 . . . . . . Sed12g0612 . . . . . . Cpe17g00924 Cpe03g01219 Bhi12g02421 Tan06g1481 Cmetu07g0215 . . . . . . . . . . . Lsi09g01746 . Chy07g01484 Cme07g01921
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0017312 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 4 0 6
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g00296 Csa_Chr04 FPKM 0.230297 0.27765 0.53617 0.514011 1.324545 0.776166 1.581877 0.0 0.0 0.0