Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00303 ATGATGGAAAATTTCCCTAGTTTTCTCTCAACTTCATCCTCTTCATCCGCCCTTTCTCTCCAACAAATCTTGTTTTCTCGAGCTTCCAACCACGGGGGAGACCATTTTCGACAGCCACCCTTCGTCTCTGATGGCTTTCCGATCTTGTTTCGTGACGTTTCAACAGACGACATGTCGTTTGATGCAACGAGTAGTGTGAAGGATGATGATCGTAATAATGTTGCTGTTTCGGTTAGTACTGAAAGGTTTCGTGTTGATGGGTCGTCGGGTAGAAGTGGAGTAGTGGAATATGGGTTGAAGAAGGAGGAGGGGGAGGGGAGGGGACGAGGGGAGGATTGTGATAAGAAGAAGAAGATGAGAAATAGAAGATTTGCTTTTCAAACAAGAAGTCAAGTTGATATTCTTGATGATGGTTATAGATGGAGGAAGTATGGACAGAAGGCTGTGAAGAACAACAAATTCCCAAGAAGCTACTATAGATGTACACACCAAGGATGCAAAGTGAAGAAGCAAGTTCAAAGGCTAACAAGAGATGAAGGAGTGGTGGTGACAACTTATGAAGGCATTCATTCTCATCCCATTGAGAAATCCACTGATAATTTTGAGCATATTTTGTCTCAAATGCAAATTTACACTACTTCTTATTGA 648 42.13 MMENFPSFLSTSSSSSALSLQQILFSRASNHGGDHFRQPPFVSDGFPILFRDVSTDDMSFDATSSVKDDDRNNVAVSVSTERFRVDGSSGRSGVVEYGLKKEEGEGRGRGEDCDKKKKMRNRRFAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCKVKKQVQRLTRDEGVVVTTYEGIHSHPIEKSTDNFEHILSQMQIYTTSY* 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1881152 1882944 + CsaV3_4G003030.1 Csa04g00303 525913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00303 215 SMART WRKY_cls 135 194 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa04g00303 215 ProSiteProfiles WRKY domain profile. 130 195 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa04g00303 215 SUPERFAMILY WRKY DNA-binding domain 127 194 IPR036576 GO:0003700|GO:0006355|GO:0043565
Csa04g00303 215 Gene3D WRKY domain 120 194 IPR036576 GO:0003700|GO:0006355|GO:0043565
Csa04g00303 215 PANTHER WRKY TRANSCRIPTION FACTOR 75-RELATED 78 211 - -
Csa04g00303 215 Pfam WRKY DNA -binding domain 136 193 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa04g00303 215 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 78 211 IPR044810 GO:0003700
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02584 Csa-Chr2:22545696 Csa04g00303 Csa-Chr4:1881152 8.35E-42 dispersed
Csa03g00858 Csa-Chr3:7219640 Csa04g00303 Csa-Chr4:1881152 5.91E-36 dispersed
Csa03g02485 Csa-Chr3:23279533 Csa04g00303 Csa-Chr4:1881152 1.08E-59 dispersed
Csa04g00303 Csa-Chr4:1881152 Csa03g01529 Csa-Chr3:11362956 3.81E-33 dispersed
Csa04g00303 Csa-Chr4:1881152 Csa04g00612 Csa-Chr4:4045602 1.83E-37 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31475 PF03106 WRKY 1.20E-25 CL0274 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00303 - - csv:101219926 395.201