Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00305 ATGGAACTCATCAGCCTTGCGATTCGGAGGCTGATGGAGGAGAATCGCCACAGAACCAACTCTCATCGGAGCTCCGATGCCGATGCCGATGCCGACGCCGACGATATGCAACTTCTTTCCCGATTACTCTCTGAGGTGGAATCAACAAGAGGAGAACAGAGGCTTAACCACTCGAAGCAAGAGGATGGGGAAATAATTGAAACAAACTTAGAGGCAGAAAGAGAAAATAATGTGGAAAGAAGTGAAATGAAATTGAAAACAGAGGAGATAGTGAAAGAGCTAAAAGAAGTGAAGAAGCAAAATTTCATAACTCACTGCCTTGTTTCAGCAATGATTATCCTCACTGTTGCTTGGCAAATCTCTGAAGTGTCTTTCATTTTGAAACTCAGAGATGGGTTGTTGAGCAATCCATTCAAATCCCTAGCAACAATTCTGAAAAGAAAGACAACTTCAGCAATACAACATCAGATTGAAGCTACTGAATTGCCTCATCTTAATATACCTGCCTTACCTCACGTGACCTTACCCGACTTCGATGATTCATAG 546 42.49 MELISLAIRRLMEENRHRTNSHRSSDADADADADDMQLLSRLLSEVESTRGEQRLNHSKQEDGEIIETNLEAERENNVERSEMKLKTEEIVKELKEVKKQNFITHCLVSAMIILTVAWQISEVSFILKLRDGLLSNPFKSLATILKRKTTSAIQHQIEATELPHLNIPALPHVTLPDFDDS* 182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1886380 1888616 - CsaV3_4G003050.1 Csa04g00305 525915

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00305 181 Coils Coil 80 100 - -
Csa04g00305 181 PANTHER F17L21.9 1 179 - -
Csa04g00305 181 PANTHER F17L21.9 1 179 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00305 - - - csv:101214522 335.109
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00305 Csa-Chr4:1886380 Csa06g00826 Csa-Chr6:6641338 3.67E-29 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1265 . . . . . . . . . . . . . . . . . . . . . . . . Cla06g00203 Cam06g0006 Cec06g0222 Cco06g0218 Clacu06g0218 Cmu06g0213 Cre06g0985 . . . . . Csa04g00305 Chy11g01788 Cme11g02320 . . . . . . . . Sed07g0084 . . . . . . . . Bhi12g02459 Tan06g1520 Cmetu07g2213 . Hepe03g1108 . . . . . . . . . . . Chy07g01477 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014344 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 0 1 1 1 1 1 1 0 0 22
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g00305 Csa_Chr04 FPKM 9.030392 11.256151 11.199791 12.250897 13.222924 11.847559 13.025038 7.56586 7.265325 6.811686