Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00311 ATGGGTTCCATTCGTTTTCCACATTGCTTTCGTACTTCTAACAGATTCCCACTCCCCTTTTCTTTGAATTGCCACGGTCGTCACCAGCTGCAATGCCGGAAAAACCCTTTTCGTTTGACTGTTTATTCCCAATCTGGGTTTCTCTCTTCTTTTTGTAATCATAACAGACGGATTGTTTGTGGGGTTTCCTCTGCTTCTCAAGAAACTATCAGGGAAGATGAGGAGCAAAAGATGACCGGGAAACTGGGAAGTGGCGGGAAAGTCCTTCTGAAACTGAGGTTGGCTCACCAAGTTGAATTTGGGGAGTCTGTTGTAATACTAGGGTCGTCTGAAGAATTGGGCTCATGGAAGAATTATACTCTTCTGAATTGGAGCAAGGATGGGTGGGTTTGTGATTTAGAGCACAGGGGGGATGAACGAGTGGAGTTCAAGTTCGTTATTTTGGGGAAGGATGGGAGTGTATCATGGGAATCTGGTGATAACCGGGTTCTCCAGTTGCCTAAGGTAGGGAAATTTAGCTTAGCTTATCAATGGAATAAAACTGGGGAGGTTGTGGAAATGTTGCCCCTGAAATTAGAGGAGATTAATGGAGATGGAACGTTGCCTTTGGATGCAAAAGCCATTGAAGAAAGAAATGAAACGTTGCCATTGGATGCAGAAGGGGTCGACAAAGGAGTTGGAGCGTTGCTTTTTGATGTGAATGAGATTAACGAAGGAGATGAAAAGGACAAGGATGTTGAAGATGGCAATGGATCTTTGGTTGATGAGGCCAGTCCTTTTGTTGGGCAGTGGAAAGGGAAGGAAATCTCATTTATGAGGTCTAATGAACATCACAGCCGAGAATCTGAGCGGGTTTGGAACACTTCTGATCTTAAGGGGTTGGCTCTACAGTTGGTAGAAGGAGATAAAAATGCCAGGAATTGGCGAAGAAAGCTTGATGTTGTGCGTGAATTATTAGTTGAAAATGTGCATGCTGAGAATTGCCTGGAGTCATTGATATATTCTGCTATCTACCTCAAGTGGATAAATACAGGTCAAATCCCTTGTTTTGAGGATGGAGGTCATCACAGGCCAAATAGGCATGCCGAAATCTCTAGGATTATATTTCGTGAATTAGAACGATTATCCTCCAAGAAAGATATTTCTCCTCAGGTAGCCCTCATTGTCAGAAAAATTCATCCATGTTTGCCATCTTTTAAGTCAGAATTTACTGCATCTGTTCCATTAACACGTATACGCGATATTGCTCATCGGAATGATATCCCTCATGACCTCAAGCAAGAAATCAAACATACAATTCAAAACAAGCTTCATCGCAATGCCGGTCCGGAGGACTTAATTGCCACAGAAGCAATGCTTACGAGGATAACCAAAAACCCTGGAGAATATAGTGAAGCATTTGTAGAGCAGTTCAAAATATTCTACCAAGAGTTAAAAGATTTCTTCAATGCTGGGAGCCTTGCAGAACAACTTGAATCAATCAAGGAGTCTGTTGATGGACATGGCTTGTCGGCTCTTGCCCACTTCCTGGAGTGCAAAAAGAACTTGGATGCTGCAGACGAGTTGGGCAGTTCTTTTCAAAACCAAGGCACTGACCTGGTTTTCAAAACCATTCAATCCTTGAATGCTTTGAGAGAAATACTCGTAAGAGGTCTTGAAAGTGGCTTACGAAATGATGCTTCAGATACTGCAATAGCCATGCGACAAAAGTGGCGTCTTTGTGAGATTGGACTTGAGGACTACTTATTTGTTCTTCTTAGCAGATTCCTAAATGTGCTGGAGGCAACAAGCGGTGCTGATTGGCTGGCAGAAAATGTGAAGTCAAAGAATGTAAGCTCTTGGAATGATCCACTGGATGCCCTAATTTCTGGTACTCATCAGCTGGGTTTATCTGGTTGGAAGCCAGAAGAATGTGTGGCTATTGTAAATGAGATTGGTGCTTGGAAGGAGAAAGGTCTCGCTGAAAGGGAAGGAAATGAAGATGGCCAAAAAATTTGGGGATTGAGGCTTAAGGCTACTCTTGATAGAACAAGGAGGCTGACCGAAGAATATTCCGAAGCACTTCTTCAAATATTCCCTGAGAAAGTTCAGATGCTTGGAAAAGCATTTGGGATCCCTGAGAACAATGTGAGAACATATGCTGAAGCTGAAATTCGTGCTAGTGTAATTTTTCAGGTATCAAAGCTATGCACTATTCTTCTGAAAGCAGTCAGAAGTTCACTTGGATCACAGGGCTGGGATGTTCTTGTGCCTGGATCTGTTGAAGGAACATTTGTTCAGGTTGAGAGGATTGTTCCAGGGTCTCTTCCAACATCCATAGAGGGCCCTGTTATTCTAATGGTTAACAAAGCTGATGGCGATGAAGAGATAACAGCTGCTGGAAGCAACATAACAGGAGTTGTGCTACTACAGGAACTACCTCATTTATCTCATCTTGGTGTAAGGGCTCGTCAAGAAAAAGTTGTATTTGTGACGTGTGAAGATGAGGAGAGAATTTCTGTTCAGCAGAAACTTCTTGGAAAATTTGTGAGGATGGAAGCATCGGCAACTGGCGTTCATATATGTCCTCCATCAGATTCTAGCACCAATAATTTTCCTATTGGCACTGATAAATTTCCTGCCAGGACTGCTCCAGATGAATATGTGTTTACTTTTGGAAAGTCCAGTATGGAAGATCCCTCATTACCTCCCTCGGGAGCTCCCTACTCGAAACAGGAAATTTCTTCTGGAGTAGTACCGCTTGCTGATGCAGGTGCTCAAATTGCGGGAGCAAAAGCTGCAGCTTGTGGTCGTTTGGCTTCTTTGGCTGCCATCTCTGAGAAAAGTTTTACAAATCTAAAGATTCCAGCTGCGTTTCGAGTCCCTGCAGGGGCAGTGATTCCATTTGGTTCTATGGAATCGGCACTCACTCAAAGTAATTCCATGAAAACGTTCAAATCTATTTTGGAACAAATAGAAACAGCAAAAGTAGGAGTGGAACTAGATGAACTCTGCAAACAACTACAGGAGTTGGTGTCCTCCCTGCAATTGTCACAAGACATGATAGATAGTGTGGGGAGAATATTTCCTGAAGATGCACGCTTAATCGTCCGGTCTAGTGCCAATGTCGAGGATTTGGCTGGCATGTCAGCTGCTGGACTTTATGATTCAATTCCAAATGTAAGTTTGAGAAATAAAACTGTCTTTAGCAATGCTGTTAGCAAAGTATGGGCATCATTGTACACTCGAAGAGCAGTTCTAAGTAGACGAGCTGCTGGGGTACCTCAGAAAGATGCTCTAATGGCAGTGCTGGTGCAAGAAATGCTTTCTCCCGACTTATCATTTGTTCTACACACATACAGCCCAACCGACCAAAACGACAAGTCCGTTGAGGCTGAGATTGCCTGTGGACTTGGCGAAACTCTGGCTTCTGGAACCCGCGGCACACCCTGGCGTCTTTCATCTGGGAAGTTTGATGGTCAAGTACAAACACTGGCCTTTGCAAACTTCAGTGAAGAACTAAGAGTTCTTTCTACTGGCCCCGCTGATGGAGAAATGGCACGTTTTACTGTAGATTACAGTAAAAAACCACTGTCCATTGAACCTAAATTTCGTGAACAGCTAGGTCAACGTCTTTGTGCTGTTGGCTATTTCTTGGAATGCAAGTTTGGCTGTCCACAGGATGTCGAAGGCTGCACCGTGGGTGATGACATTTATATAGTCCAAGCACGCCCGCAACCATTGTAA 3726 43.59 MGSIRFPHCFRTSNRFPLPFSLNCHGRHQLQCRKNPFRLTVYSQSGFLSSFCNHNRRIVCGVSSASQETIREDEEQKMTGKLGSGGKVLLKLRLAHQVEFGESVVILGSSEELGSWKNYTLLNWSKDGWVCDLEHRGDERVEFKFVILGKDGSVSWESGDNRVLQLPKVGKFSLAYQWNKTGEVVEMLPLKLEEINGDGTLPLDAKAIEERNETLPLDAEGVDKGVGALLFDVNEINEGDEKDKDVEDGNGSLVDEASPFVGQWKGKEISFMRSNEHHSRESERVWNTSDLKGLALQLVEGDKNARNWRRKLDVVRELLVENVHAENCLESLIYSAIYLKWINTGQIPCFEDGGHHRPNRHAEISRIIFRELERLSSKKDISPQVALIVRKIHPCLPSFKSEFTASVPLTRIRDIAHRNDIPHDLKQEIKHTIQNKLHRNAGPEDLIATEAMLTRITKNPGEYSEAFVEQFKIFYQELKDFFNAGSLAEQLESIKESVDGHGLSALAHFLECKKNLDAADELGSSFQNQGTDLVFKTIQSLNALREILVRGLESGLRNDASDTAIAMRQKWRLCEIGLEDYLFVLLSRFLNVLEATSGADWLAENVKSKNVSSWNDPLDALISGTHQLGLSGWKPEECVAIVNEIGAWKEKGLAEREGNEDGQKIWGLRLKATLDRTRRLTEEYSEALLQIFPEKVQMLGKAFGIPENNVRTYAEAEIRASVIFQVSKLCTILLKAVRSSLGSQGWDVLVPGSVEGTFVQVERIVPGSLPTSIEGPVILMVNKADGDEEITAAGSNITGVVLLQELPHLSHLGVRARQEKVVFVTCEDEERISVQQKLLGKFVRMEASATGVHICPPSDSSTNNFPIGTDKFPARTAPDEYVFTFGKSSMEDPSLPPSGAPYSKQEISSGVVPLADAGAQIAGAKAAACGRLASLAAISEKSFTNLKIPAAFRVPAGAVIPFGSMESALTQSNSMKTFKSILEQIETAKVGVELDELCKQLQELVSSLQLSQDMIDSVGRIFPEDARLIVRSSANVEDLAGMSAAGLYDSIPNVSLRNKTVFSNAVSKVWASLYTRRAVLSRRAAGVPQKDALMAVLVQEMLSPDLSFVLHTYSPTDQNDKSVEAEIACGLGETLASGTRGTPWRLSSGKFDGQVQTLAFANFSEELRVLSTGPADGEMARFTVDYSKKPLSIEPKFREQLGQRLCAVGYFLECKFGCPQDVEGCTVGDDIYIVQARPQPL* 1242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1904896 1919818 + CsaV3_4G003110.1 Csa04g00311 525921

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00311 1241 Gene3D - 1103 1239 - -
Csa04g00311 1241 SUPERFAMILY Glutathione synthetase ATP-binding domain-like 920 1239 - -
Csa04g00311 1241 PANTHER PHOSPHOGLUCAN, WATER DIKINASE, CHLOROPLASTIC 48 1240 - -
Csa04g00311 1241 ProSiteProfiles CBM20 (carbohydrate binding type-20) domain profile. 80 180 IPR002044 GO:2001070
Csa04g00311 1241 Gene3D - 902 1101 IPR013815 GO:0005524
Csa04g00311 1241 Pfam Starch binding domain 91 170 IPR002044 GO:2001070
Csa04g00311 1241 Gene3D Immunoglobulins 85 179 IPR013783 -
Csa04g00311 1241 SMART CBM_20_2 85 176 IPR002044 GO:2001070
Csa04g00311 1241 Pfam Pyruvate phosphate dikinase, AMP/ATP-binding domain 933 1239 IPR002192 GO:0005524|GO:0016301|GO:0016310
Csa04g00311 1241 SUPERFAMILY Starch-binding domain-like 85 178 IPR013784 GO:0030246
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00311 K15535 PWD; phosphoglucan, water dikinase [EC:2.7.9.5] - csv:101214042 2413.26
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03083 Csa-Chr3:28961385 Csa04g00311 Csa-Chr4:1904896 4.36E-06 dispersed
Csa04g00311 Csa-Chr4:1904896 Csa05g02313 Csa-Chr5:25605353 3.50E-14 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1215 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00311 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004547 2 0 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 2 2 1 1 3 3 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g00311 Csa_Chr04 FPKM 9.231061 9.095245 10.249553 6.816604 9.1023 10.540868 13.739722 6.746416 4.038163 3.386773