Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00335 ATGGCAAACTCGATGGCTAGATCTTTTCTGCAGGTTGCTGCTACGGAAGAGGTTGCTTCCCCTCTTCGTGTTGTTCAGATTGAAGGATTGGTTATATTGAAGATAATCAAGCATTGTAAGGAGTTTTCACCAGCTCTTGTGACCGGTCAACTTCTTGGGCTAGATGTTGGTAGTGTTCTTGAAGTCACTAATTGCTTTCCCTTCCCGACTCGGGAGGAGGATGAGGAGATTGAAGCCGATGGTGCTAATTACCAGCTTGAAATGATGAGATGCTTGAGAGAAGTCAATGTTGACAACAACACTGTTGGATGGTACCAGTCAACCTTCTTAGGTTCATATCAGACTGTAGAGCTGATTGAGACGTTTATGAATTATCAGGAAAATATTAGGCGGTGCGTCTGCATAATTTATGACCCATCAAGGTCTAATCAAGGCGTCTTAGCTCTTAAAGCATTGAAACTTTCAGATTCTTTTATGGAACTTTACCGCACCAACAGCTTTACTGGAGAGAAATTGAGGGAGAAGAACTTATCGTGGGTGGATATTTTTGAGGAAATACCTATCAAAGTTTCAAATTCTGCCCTCATTAGTGCCTTTATGACGGAGCTTGAATCTGACTCTCCTGTCACCCAGTGTGATTATGACCGCTTGCAACTTTCAACCAATCCATTTATGGAGAGGAATGTGGAATTTCTGATTGAATGTATGGATGATTTGTCAGTCGAGCAACAGAAGTTCCAATTTTACTATCGGAGCCTGACCCGTCAGCAAGCTCAGCAACAATCATGGCTTCAAAAGAGAAGAGCCGAAAACATGACGAGGAAGGCTGCAGGTGAAGAGCCTCTCCCTGAGGAGGATCCTACAAACCCCATCTTTAAACCACTCCCCGAGCCATCACGTTTGGATAGCTATCTCATAACAAATCAAATAGCAAACTACTGCAATCAAATTAATGGGGTTGCTGGACAGAGTTTCAACAGACTTCATTTGATGAAGGCTCTTCACGACAACTAA 1014 42.9 MANSMARSFLQVAATEEVASPLRVVQIEGLVILKIIKHCKEFSPALVTGQLLGLDVGSVLEVTNCFPFPTREEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTFLGSYQTVELIETFMNYQENIRRCVCIIYDPSRSNQGVLALKALKLSDSFMELYRTNSFTGEKLREKNLSWVDIFEEIPIKVSNSALISAFMTELESDSPVTQCDYDRLQLSTNPFMERNVEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRAENMTRKAAGEEPLPEEDPTNPIFKPLPEPSRLDSYLITNQIANYCNQINGVAGQSFNRLHLMKALHDN* 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2047599 2051099 - CsaV3_4G003350.1 Csa04g00335 525945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00335 337 Pfam C-terminal region of eIF3h 143 335 IPR045810 -
Csa04g00335 337 Hamap Eukaryotic translation initiation factor 3 subunit H [EIF3H]. 20 337 IPR027524 GO:0003743|GO:0005737|GO:0005852
Csa04g00335 337 MobiDBLite consensus disorder prediction 264 294 - -
Csa04g00335 337 MobiDBLite consensus disorder prediction 268 282 - -
Csa04g00335 337 CDD MPN_eIF3h 23 286 IPR027524 GO:0003743|GO:0005737|GO:0005852
Csa04g00335 337 Gene3D Cytidine Deaminase, domain 2 1 216 - -
Csa04g00335 337 ProSiteProfiles MPN domain profile. 25 158 IPR037518 -
Csa04g00335 337 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 23 126 IPR000555 GO:0005515|GO:0008233|GO:0008237
Csa04g00335 337 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED 4 337 - -
Csa04g00335 337 SMART pad1_6 24 157 IPR000555 GO:0005515|GO:0008233|GO:0008237
Csa04g00335 337 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT H 4 337 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00335 Csa-Chr4:2047599 Csa03g03099 Csa-Chr3:29043685 5.05E-06 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00335 K03247 - csv:101211860 676.011