Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00344 ATGGGGTTATTCTTGTTGGTGGATTTGGTTGTTTCGTTCTTGAAGAAGATGTGTGGTTGGAGGGGTGGATTGTTTGTGGAATTGGTTGTTTTTGCAGATATGTGTTTGTTGGTGTCAGGTTTAGGTTCAATGTCTCCTCTTGCTGTTTCTTATGGGGAGAAAGGGCCTGTTTTTTGTGGTTTGAAGTCAGATGGGTCTCATCTTGTGAACTGTTTTGGTTCAAATTCAGCCATAACTTATGGAACCCCTTCTCATTTCCCATTCATTGGTCTCACTGCTGGTGATGGGTTTGTTTGTGGGCTTCTTTTGGATTCCAACCAACCTTATTGTTGGGGGAGCAGTGGCTATGTTCAAATGGGTGTTCCTCAGCCCATGATCAAAGGAGCTCAATACCTGGAAATTAGTGCTGGTGATTATCATCTGTGTGGACTTCGAACGCCTCTCACTGGACGGCGTAGGAACATGTCATTTGTCGATTGTTGGGGTTACAACATGACCAGAACCTTTGCTTTTGATGGTCCTATTGAATCGATCTCAGCGGGGTCTGAGTTCAACTGTGGGCTGTTTTCTCTTAATAGAACTGTTTTCTGTTGGGGTGATGAGACGAGCAGCCGTGTAATCAGTTTGATACCTAAAGATATGAGGTTTCAAAAGATAGCGTCTGGTGGATATCATGTTTGTGGAATTTTAGAGGGTGCAAATTCAAGAGCGTTTTGTTGGGGAAGGAGCTTAGACATTGAAGAAGAGATCTCAGTTGCATATTCAGGTGAAGGAAATGTTGAATTGGTTCCAGTTGATCCATTAGCCTCTGTTGTTGGGGGAAAATTCCATGCTTGTGGAATAAAGAGCTCAGACCGTGGTGTGATTTGTTGGGGTTTTACGGTTAAACCGAGTACTCCACCACCGGATGGGATTAAAGTTTACGACATTGCTGCTGGAGATTACTTCACCTGTGGAATTCTAGCTGAAAAATCTCTCTTGCCTGTTTGCTGGGGTCTTGGATATCCTACTTCCCTGCCTTTAGCCGTCTCACCTGGAATCTGTAAAGCAACTCCTTGTCCTCCTGGTTTCTACGAAATTAGCCAAGACAAAGCTCGGTGTAAGTCACCAAATTTTCATGTGTGTATGCCCTGCAGTTCTGCTTGCCCTCCTGATATGTACCTAAAAGTTGAGTGCTCCTTAAAATCTGATAGGCAGTGTGAATATAATTGTTCAACTTGCTTTTCAAGTGAATGCCTCTCAAACTGCTCGTCCATGCTTTCAAATGGTATGATGGGAAGGAAAAATGGGAAATATTGGCCTGTGCAGCAGCTTCCAGTTCTTGTAGCTGAGATTGCTTTTGCTGTTTTTTTGGTAGCTATTGTGTCTTTGACTGCAATCTTATACGTCCGATACAAGTTACGGAATTGCCATTGCTCAGGAAAGGAGTTGAAGTCTAAGAAAAATAAAGGGACTGCCTCTTCCTTCCAGAAGGAAAGCTATAAAATACGTCCTGACTTGGATGAGCTGAAAATAAGGAGGGCTCAGATGTTCACCTATGAAGAACTCGAGAGAGCGACATGTGGGTTTAAGGAAGAGTCTATTGTGGGAAAGGGAAGTTTCTCTTGTGTTTTTCGAGGGGTTTTAAAGGACGGGACGGTTGTAGCAGTAAAACGAGCTATAATGTCTCCCAACATGCAGAAGAATTCAAAGGAGTTCCACACTGAACTAGACTTACTATCAAGATTAAACCATGCCCATTTGCTTAATCTGCTTGGTTATTGTGAAGAAGGTGGAGAGAGGCTTCTTGTTTATGAGTTTATGGCTCATGGTTCCTTGCATCAGCACCTCCATGGCAAGAACACAGCCTTAAAAGAACAATTGGATTGGATAAGAAGGGTCACAATTGCAGTCCAAGCAGCCAGGGGAATTGAATACTTGCATGGCTATGCTTGTCCTCCAGTCATTCATCGAGATATTAAGTCGTCAAACATTCTCATCGACGAAGAGCACAATGCTCGAGTCGCTGATTTTGGCTTGTCGTTGTTGGGACCAACTGATAGTAGCTCTCCATTAGCTGAGCTACCAGCGGGGACTCTTGGCTATCTTGATCCTGAATACTATAGACTTCATTACCTTACCACCAAGTCGGATGTGTATAGCTTTGGTGTTTTACTGCTAGAAATTCTCAGTGGTAGAAAAGCCATTGATATGCAATATGAAGAAGGGAACATAGTTGAATGGGCAGTGCCTTTGATAAGATCTGGAGATATCTCTGCAATTTTAGATCCGATATTAAAACCGCCTTCTGATGCAGAGGCCTTGAAGAGGATTGCAAATGTAGCCTGTAAATGTGTGAGAATGAGAGCGAAGGAGAGGCCATCAATGGACAAAGTGACAACTGCTTTGGAGCGTGCTCTTGCCCAATTAATGGGAAGCCCATGTAACGAACAACCGATCTTACCAACCGAGGTGGTTTTGGGAAGCAGCAGACTACACAAAAAGTCTTCTCAAAGATCATCCAACCGTTCGGTCTCTGAAACAGATATAGCAGAAGCTGAAGATCAAAGGTTCGAGTTCAGAGCTCCATCGTGGATTACATTCCCGAGTGTGACATCGTCCCAGAGGAGGAAATCCTCAGTGTCAGAAGCAGATGTTGATGGAAAGAATTTGGAAGGAAAAAATGTAGGGAATTGTGGAGGTGTTGGGGATGGATTGAAGAGTTTAGAGGAAGAGATTGGACCTGCTTCCCCTCAAGAAAAGTTGTTCTTGGAGCACAATTTTTAA 2766 43.49 MGLFLLVDLVVSFLKKMCGWRGGLFVELVVFADMCLLVSGLGSMSPLAVSYGEKGPVFCGLKSDGSHLVNCFGSNSAITYGTPSHFPFIGLTAGDGFVCGLLLDSNQPYCWGSSGYVQMGVPQPMIKGAQYLEISAGDYHLCGLRTPLTGRRRNMSFVDCWGYNMTRTFAFDGPIESISAGSEFNCGLFSLNRTVFCWGDETSSRVISLIPKDMRFQKIASGGYHVCGILEGANSRAFCWGRSLDIEEEISVAYSGEGNVELVPVDPLASVVGGKFHACGIKSSDRGVICWGFTVKPSTPPPDGIKVYDIAAGDYFTCGILAEKSLLPVCWGLGYPTSLPLAVSPGICKATPCPPGFYEISQDKARCKSPNFHVCMPCSSACPPDMYLKVECSLKSDRQCEYNCSTCFSSECLSNCSSMLSNGMMGRKNGKYWPVQQLPVLVAEIAFAVFLVAIVSLTAILYVRYKLRNCHCSGKELKSKKNKGTASSFQKESYKIRPDLDELKIRRAQMFTYEELERATCGFKEESIVGKGSFSCVFRGVLKDGTVVAVKRAIMSPNMQKNSKEFHTELDLLSRLNHAHLLNLLGYCEEGGERLLVYEFMAHGSLHQHLHGKNTALKEQLDWIRRVTIAVQAARGIEYLHGYACPPVIHRDIKSSNILIDEEHNARVADFGLSLLGPTDSSSPLAELPAGTLGYLDPEYYRLHYLTTKSDVYSFGVLLLEILSGRKAIDMQYEEGNIVEWAVPLIRSGDISAILDPILKPPSDAEALKRIANVACKCVRMRAKERPSMDKVTTALERALAQLMGSPCNEQPILPTEVVLGSSRLHKKSSQRSSNRSVSETDIAEAEDQRFEFRAPSWITFPSVTSSQRRKSSVSEADVDGKNLEGKNVGNCGGVGDGLKSLEEEIGPASPQEKLFLEHNF* 922
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2088215 2092589 + CsaV3_4G003440.1 Csa04g00344 525954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00344 921 ProSitePatterns Serine/Threonine protein kinases active-site signature. 648 660 IPR008271 GO:0004672|GO:0006468
Csa04g00344 921 Gene3D Transferase(Phosphotransferase) domain 1 601 808 - -
Csa04g00344 921 MobiDBLite consensus disorder prediction 824 840 - -
Csa04g00344 921 PANTHER RECEPTOR-LIKE KINASE 23 921 - -
Csa04g00344 921 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN ACR4 23 921 - -
Csa04g00344 921 SUPERFAMILY RCC1/BLIP-II 42 293 IPR009091 -
Csa04g00344 921 SMART serkin_6 523 800 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g00344 921 ProSitePatterns Protein kinases ATP-binding region signature. 529 551 IPR017441 GO:0005524
Csa04g00344 921 Gene3D - 166 339 IPR009091 -
Csa04g00344 921 ProSiteProfiles Protein kinase domain profile. 523 800 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g00344 921 SUPERFAMILY Protein kinase-like (PK-like) 505 796 IPR011009 -
Csa04g00344 921 Gene3D Phosphorylase Kinase; domain 1 494 600 - -
Csa04g00344 921 SUPERFAMILY RCC1/BLIP-II 268 337 IPR009091 -
Csa04g00344 921 Gene3D - 48 165 IPR009091 -
Csa04g00344 921 ProSiteProfiles TNFR/NGFR family cysteine-rich region domain profile. 352 400 IPR001368 GO:0005515
Csa04g00344 921 MobiDBLite consensus disorder prediction 864 897 - -
Csa04g00344 921 MobiDBLite consensus disorder prediction 824 843 - -
Csa04g00344 921 CDD STKc_IRAK 529 798 - -
Csa04g00344 921 Pfam Protein tyrosine and serine/threonine kinase 526 795 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02882 Csa-Chr3:27557079 Csa04g00344 Csa-Chr4:2088215 9.41E-73 dispersed
Csa04g00344 Csa-Chr4:2088215 Csa06g02563 Csa-Chr6:22669931 3.78E-117 dispersed
Csa05g02172 Csa-Chr5:24710000 Csa04g00344 Csa-Chr4:2088215 6.19E-54 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78110 PF07714 PK_Tyr_Ser-Thr 4.00E-44 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00344 - - csv:101210393 1871.29