Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00346 ATGTCTTCTCAAGATTCACTCCCAAAATGGACTTCCAAGCCTTGTGTAATGGGCATAGATGAAGCTGGTCGAGGCCCTGTTTTAGGTCCAATGGTGTATGGATGTTTGTACTGCGCCAGTTCCTATTTGAAACAACTTTCGTCTTTGAATTTTGCAGACTCGAAAACTTTGAAAGAAGAGAAGAGGGAGGAATTGTTTGAAGATTTGAAGGCTAATGAGTCAATTGGATGGGCTGTTGATGTCATTGATCCTCGAGAACTTTCTTCGAAGATGCTAAATAAAGTAAAGATCAACCTAAATGAAATATCACATGACTCTGCGATGGGTCTGGTCACCAAGGTTCTAAGCATGGGAGTTCTTTTAACTGAGGTTTATGTGGATACTGTTGGAGATCCTGAAAAGTACAGGATCAAGTTGTCTGAAAAATTTCCTAATATAAAATTTGTAGTTGCAAAGAAAGCTGATAGCTTGTATCCTGTTGTCAGTGGGGCAAGCATAGTCGCAAAGGTCACAAGAGATCGTGCATTGCGGGAATGGGCATTGGAGGAAACAGCTGAAAACATGCATAGAAACTTTGGTTCTGGATACCCTGGAGATCCAACAACTAAATGTTGGTTAGAAGATCACAAGCACTCGGTATTTGGGTTCCCTACACTAGTCCGCTTCAGTTGGGGTACCTGCACTTCATATTTCAAAGACGTTGTTGAAGTATCATGGGAGTCGGATAAAGTGGATGAAGATGGGGCAACGGGTGGGAGTGGTAAGAAACAATTAAGATTAAGCAATGTTGGCATCACCACATCCAAGAGAAAGAGTGAAGAAATTGAATCAAGTGGCAAAGGACGGTGCAAGTTTTTCCAGGCTAGAAAACTTGAACAACTCTCTCGTTTTTGA 894 41.61 MSSQDSLPKWTSKPCVMGIDEAGRGPVLGPMVYGCLYCASSYLKQLSSLNFADSKTLKEEKREELFEDLKANESIGWAVDVIDPRELSSKMLNKVKINLNEISHDSAMGLVTKVLSMGVLLTEVYVDTVGDPEKYRIKLSEKFPNIKFVVAKKADSLYPVVSGASIVAKVTRDRALREWALEETAENMHRNFGSGYPGDPTTKCWLEDHKHSVFGFPTLVRFSWGTCTSYFKDVVEVSWESDKVDEDGATGGSGKKQLRLSNVGITTSKRKSEEIESSGKGRCKFFQARKLEQLSRF* 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2099372 2102129 - CsaV3_4G003460.1 Csa04g00346 525956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00346 297 SUPERFAMILY Ribonuclease H-like 15 232 IPR012337 -
Csa04g00346 297 CDD RNase_HII_eukaryota_like 17 233 - -
Csa04g00346 297 Pfam Ribonuclease HII 17 227 IPR024567 GO:0004523
Csa04g00346 297 Gene3D - 2 186 IPR036397 GO:0003676
Csa04g00346 297 PANTHER RIBONUCLEASE 5 297 - -
Csa04g00346 297 PANTHER RIBONUCLEASE H2 SUBUNIT A 5 297 IPR001352 GO:0003723|GO:0004523
Csa04g00346 297 ProSiteProfiles Ribonuclease (RNase) H type-2 domain profile. 14 236 IPR024567 GO:0004523
Csa04g00346 297 Gene3D Ribonuclease hii. Domain 2 187 234 IPR023160 GO:0004523
Csa04g00346 297 TIGRFAM TIGR00729: ribonuclease HII 16 228 IPR004649 GO:0004523|GO:0016070
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00346 K10743 - csv:101210143 600.512